UFO04526.5prime Sequence
914 bp (894 high quality bases) assembled on 2009-06-09
> UFO04526.5prime
CAGTCGACATGGCCGTGCCCTTTTATTTGCCCGAGGGCGGCGCCGATGAC
GTAGCGTCGAGTTCATCGGGAGCCTCGGGCAACTCCTCCCCCCACAACCA
CCCACTTCCCTCGAGCGCATCCTCGTCCGTCTCCTCCTCGGGCGTGTCCT
CGGCCTCCGCCTCCTCGGCCTCATCTTCGTCCTCCGCATCGTCGGACGGC
GCCAGCAGCGCCGCCTCGCAATCGCCGAACACCACCACCTCGTCGGCCAC
GCAGACGCCGATGCAGTCTCCACTGCCCACCGACCAAGTGCTATACGCCC
TCTACGAGTGGGTCAGGATGTACCAGAGCCAGCAGAGTGCCCCGCAAATC
TTCCAGTATCCGCCGCCAAGCCCCTCTTGCAATTTCACGGGCGGCGATGT
GTTCTTTCCGCACGGCCATCCGAATCCGAACTCGAATCCCCATCCGCGCA
CCCCCCGAACCAGCGTGAGCTTCTCCTCCGGCGAGGAGTACAACTTCTTC
CGGCAGCAGCAGCCGCAACCACATCCGTCATATCCGGCGCCATCAACACC
GCAGCCAATGCCACCGCAGTCAGCGCCGCCGATGCACTGCAGCCACAGCT
ACCCGCAGCAGTCGGCGCACATGATGCCACACCATTCCGCTCCCTTCGGA
ATGGGCGGTACCTACTACGCGGGCTACACGCCGCCACCCACTCCGAACAC
GGCCAGTGCGGGCACCTCCAGCTCATCGGCGGCCTTCGGCTGGCACGGCC
ACCCCCACAGCCCCTTCACGTCGACCTCCACGCCGTTATCGGCGCCAGTG
CGCCCAAGATGCGCCTGCAGCGCAGCCAGTCGGATGCGGCAGACGCAGCG
ATTGACCTCGACGGGCGAGATGAGCGCAGAACAGAGTGATCATGAGGGAC
TCGGAACGAGTTGC
UFO04526.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:57:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| hid-RB | 2190 | CG5123-RB | 520..1430 | 9..912 | 4305 | 98.7 | Plus |
| hid-RA | 4018 | CG5123-RA | 520..1430 | 9..912 | 4305 | 98.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:57:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 18173053..18173555 | 840..339 | 2465 | 99.8 | Minus |
| 3L | 28110227 | 3L | 18184792..18185122 | 339..9 | 1655 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:57:44 has no hits.
UFO04526.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:30:23 Download gff for
UFO04526.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| W-RA | 510..1415 | 1..901 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:23:26 Download gff for
UFO04526.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| W-RA | 514..1419 | 1..901 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:47:04 Download gff for
UFO04526.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| hid-RA | 514..1419 | 1..901 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:47:04 Download gff for
UFO04526.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 18173047..18173554 | 340..845 | 99 | <- | Minus |
| 3L | 18184792..18185126 | 1..339 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:23:26 Download gff for
UFO04526.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 18166147..18166654 | 340..845 | 99 | <- | Minus |
| arm_3L | 18177892..18178226 | 1..339 | 98 | | Minus |
