UFO04531.5prime Sequence
1125 bp (996 high quality bases) assembled on 2009-06-09
> UFO04531.5prime
CAGTCGACATGGCCAACAAATTCAGGAGTCTGAACAGCAAACTTTTCCAG
CTGGCCATGAGCGGCATCCAGCGGACATCGGTGCGTCCGCGGATAAGTTT
TCCGGGTCGTGGAAGCGGCTTTACTGGAAATCGCAAGCTGCTGGGAGCCC
TGGGAGCCCTAACCGGAACAGCAGGGCTGCTGATCTACGCCCTGGAAACC
AGCGTGGATGCCTCCTCGGACTGCGTGCATCCGGCCCACCAGCACTGGAA
TCACAAAGGGCTTTTGTCCGCATTGGACAAGGAGAGCGTGCGTCGAGGTT
ACACCGTTTACAAGGAGGTCTGCTCCTCCTGCCACTCATTGCAGTACATG
GCCTATCGCAACCTGGTGGGAGTGTGCATGACGGAGGCGGAGGCCAAGGC
CGAGGCGGAGGCCATCACGGTGCGGGATGGGCCCAACGAGGAGGGCGAGT
ACTACGAGCGTCCCGGCAAGCTGTCCGATCACTTCCCCTCTCCGTACGCC
AACGAGGAGGCGGCCCGTTCCGCCAACAATGGCTCCTATCCGCCGGATCT
CAGCTATATTGTGTCGGCTCGCAAGGGCGGCGAGGATTACGTGTTCTCCC
TGCTCACCGGATACTGTGATCCTCCGGCTGGGTTTGCCCTTCGTGATGGA
CTGTACTTCAATCCGTACTTCTCGGGCGGAGCGATTGCCATGGGCAAGGT
AGTTGACAATGAGGTGGTCTCCTTTGAAGATCCAAATGTGCCTGCTTCGG
CCGCCCAAATTGCCAAGGATGTGTGCGTCTTCCTCAAGTGGACTTCAGAA
CCGGAGACCGACGAACGTCGCCTGCTGCTCATCAAAGTTACTCTGATTTC
GACCTTTTTGATTGGCATTTCCTACTACATCAAGCGTTTAAGTGGTCAAC
GCTCAAGTCTCGCAGATCTTCTTCATCCCGAACTGGAGGCCAAGGCCAAA
AGAGAGGCGGAGGAGCCGCCAAGCAACCGCGCAAGCCCAAGGAGCAGATG
CACAGTGCGAGAACCAGACGAAGAAGAGAGCAGCTTTCTAACCATCGTTG
GCGCGCGGGCAGGTATGGCTAATCAATCTAATCTAACCTATCAACTAGCT
AGGAGATCTGCTTGACATGCTGATT
UFO04531.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:57:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14508-RA | 1293 | CG14508-RA | 218..1235 | 9..1018 | 4770 | 98.5 | Plus |
| CG4769-RB | 1145 | CG4769-RB | 357..805 | 245..693 | 655 | 76.4 | Plus |
| CG4769-RA | 1521 | CG4769-RA | 357..805 | 245..693 | 655 | 76.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:57:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 29202743..29203735 | 997..9 | 4645 | 98.8 | Minus |
| 3L | 28110227 | 3L | 5361734..5361968 | 459..693 | 500 | 80.9 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:57:48 has no hits.
UFO04531.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:30:28 Download gff for
UFO04531.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14508-RA | 218..1250 | 9..1035 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:23:28 Download gff for
UFO04531.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14508-RA | 218..1250 | 9..1035 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:47:05 Download gff for
UFO04531.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14508-RA | 218..1250 | 9..1035 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:47:05 Download gff for
UFO04531.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 29202703..29203735 | 9..1035 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:23:28 Download gff for
UFO04531.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 25028425..25029457 | 9..1035 | 98 | | Minus |
