UFO04532.5prime Sequence
1114 bp (956 high quality bases) assembled on 2009-06-09
> UFO04532.5prime
CAGTCGACATGAGTTGGTCGGGTTCCAGTGACGAGCTCGGGGTTATTGAG
CAGCTGAAAAAGTCCGTGGAGTCGATCGTGGCCAAAACTGGGCCCAGCAG
CAAGTTCTCCAAGGATCTCGTCCAGCGGATCGGCGAGATGCAGAGCAAGC
TGGAGTCCCTGGCCGAAACGGATCGGCATGTGTTTCTCGCCGAGATGAAG
GACAAGTTCCAGCAGACGATTGGCAGAATCGAGGAGCGAATAGTGCAGCA
CGCCCATTTCGCACAGACCTACTCCAGTTCCATAGTGTCGGCAGTGATCT
TTCTCTTGGTCTCCATATTCGCTCTCTTTGGCTACAAGCTGTACAAATCC
CTGACGGAAAAGGAGCTCAAGAAGCAGGAGAAACTGAAGAGCAAGCAACA
GAAGAAGGCCAAGAAGTCAAACGCAAGCTTTCTAGACCATTCGTTTGGCG
CGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCATAAT
CACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACC
AATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGA
GTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGAT
ATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCAT
TAAGCATTCTGCCGACATGGAAGCCATCACAAACGGCATGATGAACCTGA
ATCGCCAGCGGCATCAGCACCTTGTCGCCTTGCGTATAATATTTGCCCAT
GGTGAAAACGGGGGCGAAGAAGTTGTCCATATTGGCCACGTTTAAATCAA
AACTGGTGAAACTCACCCATGGATTGGCTGAGACGAAAAACATATTCTCA
ATAAACCCTTTAGGGAAATAGGCAAGGTTTCCCCGTAACACGCCACATTC
TTGCGAATATATGTTGTAGAAACTGGCGGAAATCCTGCGTGGTATCCCTC
CAGAGCGAATGAAAACGATTCAGTTTGCTCCTGGAAACCGGGTAACAAGG
GTGAAACTATCCCATACACCACGCTACGCTTCATGCCAACGAAATTCCGG
ATGACATCATAGCG
UFO04532.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:32:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42336-RC | 747 | CG42336-RC | 183..598 | 7..422 | 2080 | 100 | Plus |
| CG42336-RD | 707 | CG42336-RD | 71..390 | 7..326 | 1585 | 99.7 | Plus |
| CG42336-RD | 707 | CG42336-RD | 457..558 | 321..422 | 510 | 100 | Plus |
| CG42336-RF | 901 | CG42336-RF | 651..752 | 321..422 | 510 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:32:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 11294853..11295172 | 326..7 | 1585 | 99.7 | Minus |
| 2R | 25286936 | 2R | 11294685..11294786 | 422..321 | 510 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:32:43 has no hits.
UFO04532.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:30:29 Download gff for
UFO04532.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42336-RC | 179..603 | 1..427 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:48:46 Download gff for
UFO04532.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42336-RC | 179..603 | 1..427 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:10:10 Download gff for
UFO04532.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42336-RC | 179..603 | 1..427 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:10:10 Download gff for
UFO04532.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 11294685..11294785 | 322..422 | 100 | <- | Minus |
| 2R | 11294858..11295176 | 1..321 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:48:46 Download gff for
UFO04532.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 7182190..7182290 | 322..422 | 100 | <- | Minus |
| arm_2R | 7182363..7182681 | 1..321 | 98 | | Minus |
