UFO04536.5prime Sequence
1152 bp (976 high quality bases) assembled on 2009-06-09
> UFO04536.5prime
CAGTCGACATGGCCAGCCAGACGCAGGGAATCCAGCAGTTGCTCGCTGCC
GAGAAAAAGGCAGCCGAGAAGGTCGCCGAGGCTCGTAAACGCAAGGCAAG
GAGGTTGAAGCAAGCCAAGGACGAGGCTACCGAGGAGATCGAGAAGTTCC
GCCAGGAGCGCGAGCGCGCCTTCAAGGAGTTCGAGGCCAAGCACATGGGA
AGTCGCGAGGGCGTGGCGGCCAAGATCGATGCGGATATCCGCGTTAAGCT
GGCCGACATGGACCGGGCCATCCAGACCCGCAAGGACCCGTTCATCCTGG
AGATCCTGCAGTACGTGTACAACATCTCGCCCGAGGTGCACAAAAACTAC
AACCACAAGGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGT
AAGTGGTCATAATCATAATCATAATCATAATCATAATCACAACTAGCCTA
GGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCC
CGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCAT
TACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAATTACGCC
CCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCC
GACATGGAAGCCATCACAAACGGCATGATGAACCTGAATCGCCAGCGGCA
TCAGCACCTTGTCGCCTTGCGTATAATATTTGCCCATGGTGAAAACGGGG
GCGAAGAAGTTGTCCATATTGGCCACGTTTAAATCAAAACTGGTGAAACT
CACCCAGGGATTGGCTGAGACGAAAAACATATTCTCAATAAACCCTTTAG
GGAAATAGGCCAGGTTTTCACCGTAACACGCCACATCTTGCGAATATATG
TGTAGAAACTGCCGGGAATCCGTCGTGGTATCACTCCACAAGCGATGAAG
ACGTTTCAGTTTGCTCCATGGAAACGGTGTAACAAGGTGAACACTATCCC
ATATCACCAGCTCACCGTCCTTCATTGCATACGAAATTCGGATGAGATTC
ATCAGCGCTAGAATGTGATTAGGCCGAATAAACTGGGCTTATTTTCTTTA
CGTCTTTAAAGGCGTATCCACTGAACGCCTGTTAGTCCATGAGCACTGAC
CG
UFO04536.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:49:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Vha13-RB | 943 | CG6213-RB | 100..450 | 9..359 | 1740 | 99.7 | Plus |
| Vha13-RA | 703 | CG6213-RA | 100..450 | 9..359 | 1740 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:48:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 19643511..19643680 | 359..190 | 835 | 99.4 | Minus |
| 3R | 32079331 | 3R | 19643738..19643838 | 191..91 | 505 | 100 | Minus |
| 3R | 32079331 | 3R | 19644201..19644287 | 95..9 | 420 | 98.9 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:49:01 has no hits.
UFO04536.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:30:20 Download gff for
UFO04536.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vha13-RA | 126..481 | 9..364 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:14:49 Download gff for
UFO04536.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vha13-RA | 100..455 | 9..364 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:39:51 Download gff for
UFO04536.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vha13-RA | 100..455 | 9..364 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:39:51 Download gff for
UFO04536.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 19643511..19643678 | 192..359 | 99 | <- | Minus |
| 3R | 19643738..19643838 | 91..191 | 100 | <- | Minus |
| 3R | 19644206..19644287 | 9..90 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:14:49 Download gff for
UFO04536.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 15469233..15469400 | 192..359 | 99 | <- | Minus |
| arm_3R | 15469460..15469560 | 91..191 | 100 | <- | Minus |
| arm_3R | 15469928..15470009 | 9..90 | 100 | | Minus |
