UFO04538.5prime Sequence
821 bp (751 high quality bases) assembled on 2009-06-09
> UFO04538.5prime
CAGTCGACATGTCTGGCGATCGACTGGATGTGATTATCTTTGGGGCCAGT
GGCTTCACCGGCAAGTACACGGTCTTCGAGGCGGTCACGGTGCTGCGCGG
CTTGCGATGGGGCATCGCTGGCAGGAACCGCGAGAAGCTGGAGGCGGTGT
TGAAGGAGATGGGCGCCAAGGCCAAGAAGGACCTCTCGCAGGTGCCCATC
TTCATCGCGGACGTCAACGACCAGGCCTCCCTGCTTGAGATGGCGAAAAA
GTGCCGGATTGTGGTGAACACGGCAGGACCCTACCGCTTTCACGGCGAAA
ACGTCGTGAAGTGCTGCATCGAATCGGGCACGCACCATGTGGACGTTAGC
GGCGAGCCCCAGTACATGGAGACCATGCAGCTGAGGTACGATCAGCTGGC
CAGGGAAAAGGGCGTGTACGTGGTCAGCGCCTGCGGCTTTGACTCCATAC
CCGCCGACATGGGCGTCGTCTTTGTGGAAAAAAACTTCGACGGCGTGGTG
AACTCCGTGGAGACCTTCCTGGAGACCGGAATCAAAGAAGGCGGCAGTGG
CGGAGGCACTGCCGGCCTCCAACTACGGAATCTGGGAGAGCGCCGTTTAC
GGGCTAGCTCACTCTGACGAGCTGCGCGGCATCCGGAATCAGATGCTATC
CCCCAGAGACTGCCTAGATTCTACCCCTTTTCTGAAGCCACGACCGCTGG
CCTTCCGCTCTACCGAGGATGACAAGGTGTGTCACCTTTTTCCCGGGCTC
CGAGCGTCGGTGGAATGAGGTCCGAAGCTTCCTTTAGAATAGGATAAAAA
ACGTCCGGCCCCGATGCAGGC
UFO04538.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:48:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2604-RB | 1636 | CG2604-RB | 133..948 | 5..821 | 3550 | 96.4 | Plus |
| CG2604-RC | 1631 | CG2604-RC | 128..943 | 5..821 | 3550 | 96.4 | Plus |
| CG2604-RA | 1581 | CG2604-RA | 170..985 | 5..821 | 3550 | 96.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:48:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 5222398..5223135 | 746..5 | 3330 | 97.8 | Minus |
| 3R | 32079331 | 3R | 12406738..12407232 | 23..517 | 840 | 78 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:48:27 has no hits.
UFO04538.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:30:35 Download gff for
UFO04538.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2604-RB | 135..914 | 1..783 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:40:34 Download gff for
UFO04538.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2604-RA | 167..946 | 1..783 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:41:23 Download gff for
UFO04538.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2604-RA | 167..946 | 1..783 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:41:23 Download gff for
UFO04538.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 5222411..5223138 | 1..733 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:40:34 Download gff for
UFO04538.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1048133..1048860 | 1..733 | 97 | | Minus |
