UFO04540.5prime Sequence
1127 bp (1001 high quality bases) assembled on 2009-06-09
> UFO04540.5prime
CAGTCGACATGCTGCCCGCCATCATTTTCCGGCAGGTGCAGCGCCCACTG
CACCATGGAGCCGCCACATTGGAGCACGTTTTGGGAGTCGGCGGAAGCAG
CTTCGTGAACTGCCTGAATCGCTATGCGGCCGCCACGGGATTCATTCGGA
TCTCGTTTCTGGACATTAAGCGGCGCAGGAACTACGAGTTAGCCAGACTT
CGCCTCTATGCCGATGAGAAGAAGCAGTCGCTCCATTTGCGCACCTTGCA
GGGACGCCATCTCCTGCAGGGTGTCATCGAAAGGAAGAACTTCCTGGTGG
ATGACATCCGGGAGGCCAGGCACAAAGTCCAGGAGCGGGTGCGCGAGAAG
ATCGACGAGATACGCGAAGAGCGAGAGAACATTATGACCATACCCAACAT
GCTGACCATCAGTCGTGCCGTCCTCTCACCCTACATCGGATATGTTATAG
TCCAGGGCGATTTCACCCTGGGCATGAGCCTTCTAGCGTTCGCCGGCATC
ACAGATCTGTTGGATGGACAGATCGCACGACGGTGGCCTTCGCAGGCGAG
CAAGTTCGGTTCCTTCCTGGACCCCATGGCTGATAAGTTGCTGATGGGCT
CGCTGGTCATCTCGCTGTGCTACACGGACCTGCTGCCCATGTGGCTCATG
GGCATCGTGGTGTTCCGGGATGTCTTTCTTCTAGGAGCTGGATTTGTTAT
ACGCTACATAAGTCTGCCACCGCCGAAAACCTTTTCGCGCTACTTCGACG
CCACCCATGTTACTGCCCAACTGGAGCCCACGCTGCTCAGCAAGATCAAC
ACGGGCGTCCAGTTGGCCACCATTGGACTGAGCCTGGGAGCTCCCATTTG
GAACTATTTGGATCACCCAGCTTTGCAGGGACTTTGGTATCTGACTGGCC
TGACTACGGCTGCCACTGCCCCCCAGCTACGCCATGAATCGGCATAATAC
CTTTAAGAATATCCAAAAAAAGACGGCAAGCTTTCTAGACCATTTCGTTT
GGCCGCCGTACCCAGGTAGGTGGTCATTATTCTAATCATAATCTTAATCA
TAAATCCACAACATAGCCCAGAGATCCTGGCATGACTATGCTGCGTTCCT
CCCCTAATAAATGCCCCGGCGGACCCG
UFO04540.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:35:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CLS-RD | 1289 | CG4774-RD | 172..1137 | 9..975 | 4765 | 99.6 | Plus |
| CLS-RC | 1373 | CG4774-RC | 256..1221 | 9..975 | 4765 | 99.6 | Plus |
| CLS-RA | 1337 | CG4774-RA | 220..1185 | 9..975 | 4765 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:34:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 25686315..25686815 | 509..9 | 2505 | 100 | Minus |
| 3R | 32079331 | 3R | 25685768..25685984 | 725..509 | 1085 | 100 | Minus |
| 3R | 32079331 | 3R | 25685567..25685703 | 861..725 | 685 | 100 | Minus |
| 3R | 32079331 | 3R | 25685388..25685501 | 975..861 | 480 | 96.5 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:35:00 has no hits.
UFO04540.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:30:36 Download gff for
UFO04540.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4774-RC | 239..1204 | 9..975 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:37:23 Download gff for
UFO04540.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CLS-RA | 220..1185 | 9..975 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:13:57 Download gff for
UFO04540.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CLS-RA | 220..1185 | 9..975 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:13:57 Download gff for
UFO04540.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 25685388..25685500 | 862..975 | 96 | <- | Minus |
| 3R | 25685567..25685702 | 726..861 | 100 | <- | Minus |
| 3R | 25685768..25685983 | 510..725 | 100 | <- | Minus |
| 3R | 25686315..25686815 | 9..509 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:37:23 Download gff for
UFO04540.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 21511110..21511222 | 862..975 | 96 | <- | Minus |
| arm_3R | 21511289..21511424 | 726..861 | 100 | <- | Minus |
| arm_3R | 21511490..21511705 | 510..725 | 100 | <- | Minus |
| arm_3R | 21512037..21512537 | 9..509 | 100 | | Minus |
