UFO04541.5prime Sequence
851 bp (642 high quality bases) assembled on 2009-06-09
> UFO04541.5prime
CAGTCGACATGAATCTCTCAAGTATTAGCCGGAAGGACTTGACGTGTTTC
GGAGTGACCACATGTGTCGTTATGGTGTGCTTCGTTCTGGTCTCAATCTT
CTCCGGATTCATGCACGAGCCCCAGAGATTCAAGACGATGTTGGTAACCA
TCGTCCTGGTCTTCTTTTTCCAATATCTTATCCTGGAGCCCATTCGTTTC
TTCATTCAGAGCATCGATTATGCCACCTGGCCGCAGGAGGATCCGCCCTA
TAGAGCGGAGGAGGGAGGGCCCACTATGGACCACATTGGCTACTTGAAGA
TCCGGCTACGCAGTCTGCGCTCCGAGCTCCTGATCTCCGAGGGCCACACG
AACGAGATGCTAAACCAGAAATACAAGCATATTGCCGGGGACCTGTTGCT
CTATGGTTCCTACTTTATTGCCCTGATGCTGATGGTGGTGTTGCAGGAGG
ATCATACTAATTACTACAATACCAACAACATGCAGCGCCTCTTCTGGGAC
ATACCTCGGTCACCTTCGGCTGTCGCAGTGTACTTTATATACCAGTACAC
AGCTATATGAGATCACCCTAGTCGAGGCCTCTACGCGCAGAAAACAACGC
TACGAGGCTGGTGGCATGACAGTGCAGAGATCGTGTGTCGCTGCGCAATG
CGCCAGTGACTGCATATTGACTGGCAGCAGATGGGACAAGAAACGTATGC
GCCGAGTGCGTCTCTATCACGATGCATATACGAGAAGTTCTGCGTATCTA
CGACCTTGACGCGATTCGAGCCAGTTCTGATGCTGCTACTCACTACGAAT
CGTGCTATTGTCACTACCGAATGGCCGTACTAGCTCAGAGACAAAATACG
G
UFO04541.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:49:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| brv2-RA | 2367 | CG16793-RA | 28..814 | 9..755 | 2890 | 94 | Plus |
| brv2-RB | 2301 | CG16793-RB | 162..748 | 209..755 | 1905 | 92.2 | Plus |
| brv2-RB | 2301 | CG16793-RB | 28..162 | 9..143 | 660 | 99.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:49:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 17344130..17344669 | 545..9 | 2490 | 98.7 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:49:07 has no hits.
UFO04541.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:30:38 Download gff for
UFO04541.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16793-RA | 20..648 | 1..618 | 96 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:14:55 Download gff for
UFO04541.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| brv2-RA | 20..648 | 1..618 | 96 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:39:55 Download gff for
UFO04541.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| brv2-RA | 20..648 | 1..618 | 96 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:39:55 Download gff for
UFO04541.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 17344131..17344677 | 1..544 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:14:55 Download gff for
UFO04541.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 17337231..17337777 | 1..544 | 98 | | Minus |
