UFO04542.5prime Sequence
945 bp (944 high quality bases) assembled on 2009-06-09
> UFO04542.5prime
CAGTCGACATGGAAACTGTGCGAAATCGAAACCCTCCGCGGATGAAGTAC
ACCGCTCCACCGAAGATGGAATCGGATTTAAACTTCACCGAGAAGGAGAA
GAAAACTCTTACCGAACTGAAGCAGCTCTATTTGGAGACCATTAACCTGG
ATGTGGCTCTGCAGCGCGACATTTACAATATCGAGAAGAAGTACGAGGAT
AAGCACAATATCATATTTGATAAGCGCAAGAAGATTCTAGATGAGTTTAG
AAAGCAAAACCACGGTGACGTGGAAACCAATCAGAGCGTGCCCAACTTTT
GGCTGAGGGTTCTCAAAGCATCGTACACCGAGTTCATCAGCAAGAGGGAT
GAGAAAATATTAGAGTGCTTAAGCGACATCCGTTCTCGGCTGTACAACGA
ACCCGTGGTGAAGTTTGATATCGAATTCCACTTCGATCCCAATGATTACT
TTACCAACACGGTGCTGACCAAGACATATTTCCTCAACTGCCTGCCGGAT
CCAGACGATCCGCTCGCATATGATGGCGCCGAGATCTACAAGTGCGAAGG
CTGCGTCATCGACTGGAAGCAGACCAAGGACCAGACCAAAACCGAAAATC
AAGAGCCGTCGTTCTTTGAGTTCTTCTCGCCGCCGCTTTTGCCAGAAGAT
ACCCTTGACCCCAACTACTGTGACGTCAATGCTATGCTGCAAAACGATTT
TGAGGTGGGCTTCTATCTAAAGGAGCGCGTGATTCCCAGGCGGTGATCTT
CTTCACCGGCGAGATTGCCGATTGTCAGAGCTCCAGCGGATCGGAGACCG
AGTCGGAAGATACCGAGGACGAGTCGGATGCCGAAGAGGAGGATGGCGTC
GACAAGGCAGCTTTCTAGACCATTCGTTGCGCGCGGGGCCCAGGTAGGTG
GTCATATCATATCATAATCATATCATAATCACAACTAGCTTAGGA
UFO04542.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:23:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mil-RA | 1097 | CG5017-RA | 122..970 | 9..856 | 4205 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:23:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 27912568..27912800 | 9..241 | 1165 | 100 | Plus |
| 3R | 32079331 | 3R | 27913052..27913282 | 364..594 | 1155 | 100 | Plus |
| 3R | 32079331 | 3R | 27913482..27913658 | 681..856 | 835 | 99.4 | Plus |
| 3R | 32079331 | 3R | 27912866..27912989 | 242..365 | 605 | 99.2 | Plus |
| 3R | 32079331 | 3R | 27913341..27913428 | 594..681 | 440 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:23:14 has no hits.
UFO04542.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:30:39 Download gff for
UFO04542.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5017-RA | 117..978 | 1..864 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:26:55 Download gff for
UFO04542.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| hanabi-RA | 117..978 | 1..864 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:14:40 Download gff for
UFO04542.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mil-RA | 117..978 | 1..864 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:14:40 Download gff for
UFO04542.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 27912563..27912800 | 1..241 | 98 | -> | Plus |
| 3R | 27912866..27912989 | 242..365 | 99 | -> | Plus |
| 3R | 27913054..27913282 | 366..594 | 100 | -> | Plus |
| 3R | 27913342..27913427 | 595..680 | 100 | -> | Plus |
| 3R | 27913482..27913658 | 681..856 | 99 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:26:55 Download gff for
UFO04542.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 23738285..23738522 | 1..241 | 98 | -> | Plus |
| arm_3R | 23738588..23738711 | 242..365 | 99 | -> | Plus |
| arm_3R | 23738776..23739004 | 366..594 | 100 | -> | Plus |
| arm_3R | 23739064..23739149 | 595..680 | 100 | -> | Plus |
| arm_3R | 23739204..23739380 | 681..856 | 99 | == | Plus |
