UFO04543.5prime Sequence
1022 bp (953 high quality bases) assembled on 2009-06-09
> UFO04543.5prime
CAGTCGACATGACCAGTTTCCGCAAGCGCACCGTGCAGAAGCCAATCCGC
GGCACCCGCACCTCGCCGCACACGGCGCAGGTGATCACCTCCAGCGGAAA
TCCGTACTTGGACGTGGTCATTGGCGGCGGTCTGCCCATGGGTTCGATCT
GCCTGATCGAGGAGGATCGCTTCATGACGCACGCCAAGGTGCTGGCCAAG
TACTTTCTGGCCGAGGGTGTGATTTCCAAGCAGGAGATATTTCTGGGCAG
CCTGGACGACATTCCAGCCGAGATGCTGCGCCGTCTGCCCAGACCGCTGA
CCGACCAGGAATCGATGGAGCAAAGCGAGGTGCAAGCGCTGGGAGATGCT
GGCGCCGAAAATGGCCTAAGGATCGCCTGGCGATACAATGATCTGCCGCT
GGTGAATTCGGAACATGCCACAGCAAAAATCGGACACCATTTCAATCTGA
TGGAACAGATGGACTCCATGATGCTCTACAATGTCAAGACTACCTTGTGG
GACGATAGCCCCAAGCATCTGGACATCGTCATTGACGAGGAGTTCTCCAA
GAGCAGCTCCCCAACCACTCCGTCGCTGGAGCAGCAGCCCGTGGAGGATG
CCCCACCGATTCCGGGCACGGAGACCGCTCCGCAGGAGAAGATGCCAGCC
CAGGAGGAGGAGAACTCTGCCAACAACAATAATAACAACAATAACAATAG
CAGCAGCGTGACCAGTAGCACAAAAACAGGCAGCCAGGATTCGCCGTTGC
AGGTGTTCCACAACCCTCGGTACAAAGGACTGCTCAACGATATTCAACAG
CTGCTGCGTAACGAGAGCTTCGTCGCTGGGACCAAGATAACCTGTGCCGC
GTCTGCCTGACCTCGTGGGATTGCCGCTGTGTACGACGAACACTTCGGCG
AGGATCTGATCAAGTTCTCACACTGCTGATGGGCAGGGTGCGGACTGCAA
CTCCGTGGTGCTGATCAGATGCCATGGACTGAGTGCCATACAAGGCAGCC
TATGGCCAAATCGCCCACTGTT
UFO04543.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:49:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6907-RB | 1512 | CG6907-RB | 113..1100 | 9..988 | 4605 | 98.4 | Plus |
| CG6907-RA | 1671 | CG6907-RA | 272..1259 | 9..988 | 4605 | 98.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:49:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 5524410..5525373 | 9..967 | 4465 | 98.8 | Plus |
Blast to na_te.dros performed 2014-11-28 19:49:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 5648..5713 | 670..734 | 129 | 68.2 | Plus |
| mdg1 | 7480 | mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). | 19..46 | 672..699 | 113 | 89.3 | Plus |
| mdg1 | 7480 | mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). | 22..49 | 672..699 | 113 | 89.3 | Plus |
| mdg1 | 7480 | mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). | 7057..7084 | 672..699 | 113 | 89.3 | Plus |
| mdg1 | 7480 | mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). | 7060..7087 | 672..699 | 113 | 89.3 | Plus |
UFO04543.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:30:40 Download gff for
UFO04543.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6907-RA | 264..1249 | 1..979 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:14:59 Download gff for
UFO04543.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6907-RA | 264..1249 | 1..979 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:39:59 Download gff for
UFO04543.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6907-RA | 264..1249 | 1..979 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:39:59 Download gff for
UFO04543.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 5524402..5525387 | 1..979 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:14:59 Download gff for
UFO04543.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 5524402..5525387 | 1..979 | 98 | | Plus |
