UFO04546.5prime Sequence
1103 bp (977 high quality bases) assembled on 2009-06-09
> UFO04546.5prime
CAGTCGACATGGAATTTTTACACGAATCCGTTGCACTGGGCGTGGATCTG
CTAATACTTGGCCTGTGTGCGCGCGAGTACGTGCACTACAAGCGAACTGC
CAAGGTGCTGAAGGCGGCACCACAATACAACATCGATGGAGACCTAAAAT
CGGTGGTGGAGCGGCAGCGCGACAAGAAGATACCATATGCGGTAATCCGG
GGCACAGTGACGCCCATCGGGGTGCCACTGAGGAGCTCCCTGGTGCCCAG
TGTGAGTGGAGTGCTGCAGATTGTGAAGCTGCATGAGCACAGGGTAACGC
GCGGATTCGCCGGCTTCTGGACGGAACAACACAAGTTGCTGCACGAATCC
GCCAACGAGATGCCCTTCGAGTTGCGTAACCAGAGCCATGGTGTGGAGAT
TGTGGACGCCTTGAGTGCCGCCGTCTTGGACGTGGACGTGGTCTACGACA
ACTACGAGCCCTCCAATCTGTCCCTCTTCGACCATGTGTTTGGTTTCTTC
TCTGGCGTCCGTCAGAGGGGATTGCAAACGACGGAGGAGGTGCTCAGAGA
AGGCAGCTTCCTGACCGCTATTGGTGAACTGGAGTTGGATGGCGATACTC
TGCGCATGCAGCCCTCCAATGAGGGACCGCTCTTCCTGACCACTGCCACC
AAGTCCACGCTTATTAAGCGGTTCGAAGATGCCAAGACAACGACGATACT
CAAGCTGGTTGTGTGCAGCACCATCTCTGCCATCCTGGTTGCCTTCATTG
CCAAGAAACTCTACCGAAAACGAAAGCAGGAGCGGGAGGAGGCCAAAATT
CGCGAACGCCTGATACGGAGCGTCGGGAGCGGAGGGCGAGGAGTCGTCCT
CACACTCTGTCCCAGGATCAACTCTGCGTGGTGTGCTCCACCAATCCCAA
GGAGATTATCCTACTGCCATGTGGTCATGTGTGTCTCTGCGAAGGACTGG
TGCCAGAAAATCTTCCGTCACCTGCCCCGGGTGTCGTGGTAGCATCGTCT
TCAAGGCAGCCGCCCTTCATCGCGCCAACTTTCTAGAACATTCGTTTGGG
CGCGCGGTCCGGGTAGTGGTCTATCATAATCATATCATATCATATCCCAC
TAG
UFO04546.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:33:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mul1-RB | 1656 | CG1134-RB | 79..1091 | 9..1023 | 4905 | 99.2 | Plus |
| Mul1-RA | 1213 | CG1134-RA | 79..1091 | 9..1023 | 4905 | 99.2 | Plus |
| CG11594-RA | 2895 | CG11594-RA | 2659..2776 | 1023..903 | 455 | 94.3 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:33:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 4021702..4022287 | 112..697 | 2930 | 100 | Plus |
| 3L | 28110227 | 3L | 4022346..4022553 | 698..904 | 990 | 99.5 | Plus |
| 3L | 28110227 | 3L | 4021535..4021640 | 9..114 | 530 | 100 | Plus |
| 3L | 28110227 | 3L | 4022819..4022928 | 903..1014 | 385 | 93.8 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:33:04 has no hits.
UFO04546.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:30:30 Download gff for
UFO04546.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1134-RA | 91..1109 | 1..1023 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:48:52 Download gff for
UFO04546.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mul1-RA | 73..1091 | 1..1023 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:10:21 Download gff for
UFO04546.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mul1-RA | 73..1091 | 1..1023 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:10:21 Download gff for
UFO04546.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 4021529..4021639 | 1..113 | 96 | -> | Plus |
| 3L | 4021704..4022287 | 114..697 | 100 | -> | Plus |
| 3L | 4022346..4022553 | 698..904 | 99 | -> | Plus |
| 3L | 4022821..4022939 | 905..1027 | 92 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:48:52 Download gff for
UFO04546.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 4022346..4022553 | 698..904 | 99 | -> | Plus |
| arm_3L | 4022821..4022939 | 905..1027 | 92 | -> | Plus |
| arm_3L | 4021529..4021639 | 1..113 | 96 | -> | Plus |
| arm_3L | 4021704..4022287 | 114..697 | 100 | -> | Plus |
