UFO04549.5prime Sequence
939 bp (931 high quality bases) assembled on 2009-06-09
> UFO04549.5prime
CAGTCGACATGGAAACAACCGCTCAGCTGCAGCAATTGAAACCCCAACAG
AGCGTCATGTCGCACGTCACGGTCACCGAGAGTGATGCCGAGTTTGCGAT
CTTGAATCTGGATTGCAACGAAGGTTTGGAGAGCTCGGTGACCAAGATTC
TGGTGGCCATCGAAGAGATGTTCTGCAGTTACTTTGAGGATCTCAAGAAG
GAGCTGGAACTGCAGAAGATGGCGGCACTGACCTTGAATCAGCTGACCCA
ACGTTACAGGATCAACACGAAGGTGGACACGAGCTGCACGTGTCCGCAGA
TCTATGAGATCGAATCGGATGATGCGATCATTAACAAATACTACATCTAC
TACCAGGTGATAGCCTGTTCCAACAATAACCAGGGTTGGGTCATCCACAA
CATGCGCCCCTATGTTCTCCTCTTTCGTCGAGAGTGCGCCAAGTTGAATC
TGAACGAGGATAGTCCCTTCATCATGGGTGACGCTTTCCACAAGCCAATC
AAGTTCTTCATCGACTTGGTGGAGGAGCTCTTCGCCTACTTCTACAGTGG
ACACGTACAGTTCGACTGCGCTGCCCACATGTTGGATCCCTTGGACTTGA
ACAGCATCGAGTACTATCAGAAGCTATTGGAACCCAATGAGGATTTCGCA
AATTACTTCAAGTACAACATGAGCTTCTGCAAGTGCCTGCGTATGCCGCG
CCGTTGTCCTGCCCACGAGTATCCGCAGTGAAAGAGGACTTTAACGCCAC
CTTTGTCAATCAGCCAAGAAGAAGCGGTGTGCCAGGCGATGCGAAAAGAT
GGCCGAGGCCGAGAGCAATTTACTGGATCGAAAGAGGTCATAGTTAGACT
CCAACGTCCCAGCGAGATGCTGGCATAAGCCCCGGTCAGGACTAGACAGG
ACAACGAAACGGAACTGAAGAGGATCTCTAGACCCAACG
UFO04549.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:57:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30393-RA | 1216 | CG30393-RA | 64..1002 | 8..939 | 4445 | 98.7 | Plus |
| CG30391-RA | 1538 | CG30391-RA | 227..780 | 138..691 | 1045 | 79.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:57:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 21266585..21267516 | 933..8 | 4285 | 98.8 | Minus |
| 2R | 25286936 | 2R | 21265563..21266116 | 691..138 | 1030 | 79.1 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:57:54 has no hits.
UFO04549.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:30:49 Download gff for
UFO04549.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30393-RA | 55..1002 | 1..939 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:23:31 Download gff for
UFO04549.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30393-RA | 55..1002 | 1..939 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:47:10 Download gff for
UFO04549.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30393-RA | 55..1002 | 1..939 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:47:10 Download gff for
UFO04549.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 21266578..21267523 | 1..939 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:23:31 Download gff for
UFO04549.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 17154083..17155028 | 1..939 | 98 | | Minus |
