UFO04550.5prime Sequence
1086 bp (964 high quality bases) assembled on 2009-06-09
> UFO04550.5prime
CAGTCGACATGGATGACTTTGATTTCAGTAGTCCACCTCCGGAGGTACGA
ACAGTTCATACCCACACGCTGAATGATGAACAGCTCAAGGATTGTGAGGC
GGCCTTCGCCCTCTTCGACGACGATAATGCCAAGGTCATTCCGATCAAGT
TATTGAGAGATTGCCTGCGAGCCGTGGCCCACAACCCGCCGGAAAACGAG
ATACAGGATTATATCACCGAAATTGATACGGATGGATCCGGCGAGCTTTA
TCTCAGTGATTTCCTATACATCATGTCGAAACGGTACGAGAATTTGACTG
TCGAAGATGAAGTTATCCTCGCGTTCAAAGTCTTCGACAAAGATGGATCT
GGCTTTATACACGAGAATGAGTTCCGTCAGATAATGACTGAATATGGCGA
TGAAATGGAAGAGGACGAGATCGAGGAAATGATACGTGATGCCGACGCCA
ACACGGAACTGAAAATCGACTACGTTCGCTTTGTGACCATGATGATGGAG
ACGGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGG
TCATAATCATAATCATAATCATAATCATAATCACAACTAGCCTAGGAGAT
CCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGG
CAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTACTGG
ATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAATTACGCCCCGCCC
TGCCACTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCCGACATG
GAAGCCATCACAAACGGCATGATGAACCTGAATCGCCAGCGGCATCAGCA
CCTTGTCGCCTTGCGTATATATTTGCCCATGGTGAAACGGGGGCGAGAGT
TGTCCATATTGCCACGTTTAAATCAAACTGGTGAACTCACCCAGGATTGC
TGAAACGAAAACATATTCTCATATCCTTTAGGAATAGCAAGTTCACCGTA
CACGCCACATCTGCCGAATATTTGTGTGAACTGCCGGAAATCGTCTGATT
CACTCGACGATGAAACGTTTCAGTGCCATGGAACCG
UFO04550.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:16:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5024-RB | 643 | CG5024-RB | 109..604 | 8..503 | 2435 | 99.4 | Plus |
| CG5024-RA | 680 | CG5024-RA | 109..604 | 8..503 | 2435 | 99.4 | Plus |
| Acam-RB | 1224 | CG17769-RB | 284..426 | 217..359 | 205 | 77.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:15:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 25811204..25811699 | 8..503 | 2435 | 99.4 | Plus |
| 3R | 32079331 | 3R | 25812194..25812336 | 217..359 | 205 | 76.2 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:16:00 has no hits.
UFO04550.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:30:51 Download gff for
UFO04550.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5024-RA | 101..607 | 1..507 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:16:00 Download gff for
UFO04550.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5024-RA | 101..607 | 1..507 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:05:03 Download gff for
UFO04550.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5024-RA | 101..607 | 1..507 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:05:03 Download gff for
UFO04550.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 25811196..25811699 | 1..503 | 98 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:16:00 Download gff for
UFO04550.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 21636918..21637421 | 1..503 | 98 | == | Plus |
