UFO04552.5prime Sequence
615 bp (613 high quality bases) assembled on 2009-06-09
> UFO04552.5prime
CAGTCGACATGCCCGGCACCTCGTATCCCACGAATAACGATAATTTCAGC
AACGGATTTCCGATGGCCACCACACAAAGTGAGCGCCTCTTGCAGGCCCA
GAATCGAAGAAAGTTCAGTTTTCCAGCCACACTACATTCCGCATCACTAC
TGGAGGTGGGTGGTGGTCCCAAGGAGACCACGAGGCGTAGGTTGAGCAAT
GTCAGCGATGCCGTAACCAGGAAACTCTCCTACACGATTGGCTGGAAGGC
GGCACAGATTCCAGCGCAGGATATCATTTCTCAGGGTCGTTGCCTGTGCG
GTCATTATATCAAGAGACGCCTCAGAAGATCTGGTTTGTTCAACAAAAAG
CTGGGACTGCAGCGCATACGTAGCATACTGGGCTCCACCTCCATGGGCAT
TGTGCGCGATGTGTTTCCAGCGGTCCAAGTGCTGGGCGATGAACTGGAGC
GCATGCATCCCCGGATATACAACGGAGTAGCTCGTCAGATTTGTCGGAAT
CCGGGTGGTGAGTTCCATACTCCGGATGCTGTGAGCTTGCTTTTGGGAGC
CGTTGGTCGCGAGCTCTTCCGGGTGGAGATTACGTGGAGCAAGGTGATCT
CTCTGTTCCCCCTCG
UFO04552.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:53:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Buffy-RA | 1038 | CG8238-RA | 137..745 | 7..615 | 2955 | 99 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:53:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 11687459..11687737 | 7..285 | 1350 | 98.9 | Plus |
| 2R | 25286936 | 2R | 11688019..11688203 | 431..615 | 880 | 98.4 | Plus |
| 2R | 25286936 | 2R | 11687811..11687959 | 283..431 | 745 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:53:42 has no hits.
UFO04552.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:31:00 Download gff for
UFO04552.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Buffy-RA | 150..764 | 1..615 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:44:46 Download gff for
UFO04552.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Buffy-RA | 131..745 | 1..615 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:33:17 Download gff for
UFO04552.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Buffy-RA | 131..745 | 1..615 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:33:17 Download gff for
UFO04552.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 11687453..11687736 | 1..284 | 97 | -> | Plus |
| 2R | 11687813..11687959 | 285..431 | 100 | -> | Plus |
| 2R | 11688020..11688203 | 432..615 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:44:46 Download gff for
UFO04552.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 7574958..7575241 | 1..284 | 97 | -> | Plus |
| arm_2R | 7575318..7575464 | 285..431 | 100 | -> | Plus |
| arm_2R | 7575525..7575708 | 432..615 | 98 | | Plus |
