UFO04559.5prime Sequence
1072 bp (967 high quality bases) assembled on 2009-06-09
> UFO04559.5prime
CAGTCGACATGTACCGCACCGAGACTCTGCTGCTAATCCTGACGAGCGTC
GGGATACCGTCACTGGCCTATCTGCCCGATGTGAACATATTCACCAACTA
CCGCACCGAGGTCTATAATGGCATTCCATCGGAGATTGATACCACACCGT
TCGTGCGGATCGGGGACAACTATTACTACATCGAGCCCATGAATAAGGTG
AATTGGTTTCAGGCGGCCGGCGCCTGTCGCATGATGAACGCCCACTTGGC
CTCCATCGAGGATAAGCCGGAAATGGAGGCGCTGATCAAATACATGAAGG
CCAAGGGGTTCAAGAACAATGATTACTTTTGGATATCGGGCAATGACCTG
GGCACCGAGGGCGCCTTCTATTGGATGTCCAACGGCCGCCCGATGACCTA
CGCCCCTTGGAACGGGCCCAAGCAAATGCCGGATAACTACGGCGGCAACG
AGAACTGCGTCCACATGTTCGCCACCCGGGAGATGATCAACGATGCCAAC
TGCAAGATCCAGATGCTGTACGTCTGCGAGGCGACGGAACCGAAAACCTT
CAAGTTCACCTACATTAAGTGGGCAAGCTTTCTAGACCATTCGTTTGGCG
CGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCATAAT
CACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACC
AATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGA
GTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCCAGCGAGCTCGAT
ATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCAT
TAAGCATTCTGCCGACGTGGAAGCCCATCACAAACGGCATGATGAACCCT
GAATCGCCAGCGGGCATCCACACCTTGTCGCCCTTGCGTAAAATATTTTG
CCCCTGGGGAAACTGGGGCGAGAAGGTGTTCCTAATTGTGCCACGCTTTA
AATCCACACTTGGTGGTAACTCCACCCGGAATGGCGTGAACGAAAACATT
ATTCTCATAACCCTTATGCAAT
UFO04559.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:57:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12111-RB | 675 | CG12111-RB | 27..590 | 9..572 | 2820 | 100 | Plus |
| CG12111-RA | 631 | CG12111-RA | 27..590 | 9..572 | 2820 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:57:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 8570293..8570745 | 572..120 | 2265 | 100 | Minus |
| X | 23542271 | X | 8570810..8570922 | 121..9 | 565 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:57:51 has no hits.
UFO04559.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:30:45 Download gff for
UFO04559.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12111-RA | 9..585 | 1..582 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:23:30 Download gff for
UFO04559.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12111-RA | 22..598 | 1..582 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:47:07 Download gff for
UFO04559.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12111-RA | 22..598 | 1..582 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:47:07 Download gff for
UFO04559.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 8570285..8570744 | 121..582 | 99 | <- | Minus |
| X | 8570811..8570927 | 1..120 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:23:30 Download gff for
UFO04559.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 8464318..8464777 | 121..582 | 99 | <- | Minus |
| arm_X | 8464844..8464960 | 1..120 | 96 | | Minus |
