UFO04560.5prime Sequence
573 bp (473 high quality bases) assembled on 2009-06-09
> UFO04560.5prime
CAGTCGACATGGAAAACCTAGACTCCACTGTCGATAGCACCGAGAACAGC
AAGTTCTCGGCCCTGTACGGTGGATTGATTAAGGAGATCGCTGCAACCTC
GAAGATGTCCACCTTGGACATCACCTGTTTGCTTTGCGTTTACTACAAGT
TCGTCAGGTTCAACGGACCTGGCGCCAAACAGATGAAGAAGAATCAGTTC
TACCAGATCTACTTGGTGCTCTTCAACGTGGCCAATGTTCAGGTGATTGA
ACGCTCCCTTCTGGCCATCACCAAGGATACCAAGTACGTGAGTCCCCGTG
CCTGGGTTGATCTCTTTGAGCTGTACACCACAGAGGATCTGGAGCGCCGT
ATGAAGTTTGCCTTTGAAGTTTATGACACCAAGAACACCGGAGTTATCGA
TCGCGAGCAGGGGGGCGTGGGCATGCGAGAAATTCCTTCCCCCGAAAGGC
GACGAACAAAGATGAAACTTATTGGACTTAAAACGGGAAATGACACTGAA
TTTTATTTTGGAAAAAAGTTTGATGGTAAAAAAAGGGATGGGGATTCATT
TTCGTTTTGAAGAAAAACCCCCC
UFO04560.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:06:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15177-RA | 1013 | CG15177-RA | 131..636 | 8..525 | 2130 | 95.4 | Plus |
| CG15177-RB | 989 | CG15177-RB | 131..584 | 8..466 | 2125 | 98.3 | Plus |
| sowi-RA | 830 | CG15178-RA | 148..467 | 9..328 | 445 | 76.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:06:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 6628829..6629191 | 370..8 | 1815 | 100 | Minus |
| 3R | 32079331 | 3R | 6627434..6627753 | 328..9 | 445 | 75.9 | Minus |
| 3R | 32079331 | 3R | 6628710..6628775 | 435..369 | 270 | 97 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:06:54 has no hits.
UFO04560.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:30:47 Download gff for
UFO04560.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15177-RA | 131..574 | 8..455 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:33:56 Download gff for
UFO04560.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15177-RA | 131..574 | 8..455 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:48:09 Download gff for
UFO04560.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15177-RA | 131..574 | 8..455 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:48:09 Download gff for
UFO04560.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 6628693..6628775 | 369..455 | 93 | <- | Minus |
| 3R | 6628831..6629191 | 8..368 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:33:56 Download gff for
UFO04560.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 2454415..2454497 | 369..455 | 93 | <- | Minus |
| arm_3R | 2454553..2454913 | 8..368 | 100 | | Minus |
