UFO04561.5prime Sequence
1106 bp (1012 high quality bases) assembled on 2009-06-09
> UFO04561.5prime
CAGTCGACATGGAGTCTTCAAGCTGGCTCACGTGGTTGACCTTGGAAAAA
TGCGACAACTTATGGACGAAATCGCTTAAGATGCCGCTTCCTTGTAGGAA
AGGAGGATTGAGATCTTTTTTGAGTACTCATCTCAAAGGCGCAACGGAGT
GTGTTAACCGGATAGCCAGTGCCCCCGTGAGGAAACCTTGCTCGATAAAC
TGGCTGGGATCTGCATGGAAATGGATAGCTGGGAATCCCGACGCAGCTGA
CTGGAACACAATTCTGGCAACACAGAAGGTGCCCTTAAAGAATAGTGACC
AACAACTGAGGATTAACTCCAGACTCTTCGACGCCACCCACGAGTCAATT
ACGAATAAACGAGGCCATCGCAATAGTAATTGTCATGCAAGCTTTCTAGA
CCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATA
ATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTG
CTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAA
CAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTC
CAAGCGAGCTCGATATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTA
CTGTTGTAATTCATTAAGCATTCTGCCGACATGGAAGCCATCACAAACGG
CATGATGAACCTGAATCGCCAGCGGCATCAGCACCTTGTCGCCTTGCGTA
TAATATTTGCCCATGGTGAAAACGGGGGCGAAGAAGTTGTCCATATTGGC
CACGTTTAAATCAAAACTGGTGAAACTCACCCAGGGATTGGCTGAGACGA
AAACATATTCTCAATAAACCCTTTAGGGAAATAGGCCAGGTTTCACCGTA
ACACGCCACATCTTGCGAATATATGTGTAGAACTGCCGGAAATCGTCGTG
TATTCACTCCAGAGCGATGAAAACGTTTCAGTTTGCTCCATGGAAACGGT
GTAACAGGGTGAACACTATTCCCATATCACAGCCTCACCGTCTTTCATGC
TACGAACTCGATGACATCATCAGGCGGGCAGAAATGTGATAAGCGATAAC
TTGGCC
UFO04561.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed on 2014-11-28 20:53:57 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:53:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 5096246..5096623 | 386..9 | 1875 | 99.7 | Minus |
2R | 25286936 | 2R | 2795671..2795821 | 130..280 | 440 | 86.1 | Plus |
2R | 25286936 | 2R | 2864053..2864238 | 307..113 | 380 | 82.1 | Minus |
2R | 25286936 | 2R | 3564433..3564543 | 147..257 | 375 | 89.2 | Plus |
3L | 28110227 | 3L | 24122711..24122880 | 130..307 | 300 | 79.2 | Plus |
2R | 25286936 | 2R | 2795578..2795645 | 14..81 | 205 | 86.8 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:53:56 has no hits.
UFO04561.5prime Sim4 Records
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:33:28 Download gff for
UFO04561.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 5096246..5096627 | 1..386 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:33:28 Download gff for
UFO04561.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 5096246..5096627 | 1..386 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:44:58 Download gff for
UFO04561.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 983751..984132 | 1..386 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:44:58 Download gff for
UFO04561.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 983751..984132 | 1..386 | 98 | | Minus |