UFO04562.5prime Sequence
827 bp (826 high quality bases) assembled on 2009-06-09
> UFO04562.5prime
CAGTCGACATGTATGCGCTTCGACACCTGCGACTCCAGAGCGCTAGGCAC
TTCCGCAGCTCTTATGCAGCGGCGGCAACAACAAAACACATGCTGCCCCG
GCAACCAGCGCGTGTTCTGATTGGAGATTGGAGCACTTGGGATAAGTCCC
GGCTGCAGGATGTATGCTCCAGGAGTTCGAGTACCGCCACTGAGCCCGTG
AAGCAGCAAACGCCGCTGCAGGAACTCGTGTCGGCCGCCAAACCCTATGC
CCAACTAATGCGAATCGACCGGCCTATTGGCACCTACCTCCTTTTCTGGC
CTTGCGCCTGGAGCATAGCGCTCAGCGCGGATGCGGGCTGCTGGCCGGAC
CTCACCATGCTGGGTCTGTTCGGCACCGGGGCACTGATAATGCGCGGCGC
CGGGTGCACTATCAACGATCTCTGGGACAAGGACATCGATGCCAAAGTGG
AGCGCACGAGGTTGCGGCCCTTGGCCTCGGGTCAGATCAGTCAGTTCGAT
GCCATAGTATTCCTCTCGGCGCAGCTCAGTCTGGGTCTTTTGGTGCTGGT
CCAGCTCAACTGGCAATCCATATTGTTGGGCGCCAGTTCGCTGGGCCTCG
TGATCACGTATCCGCTGATGAAAAGAGTCACCTACTGGCCCCAGCTGGTT
CTGGGCATGGGCTTCAATTGGGGCGCCCTACTGGGCTGGTGTGCCACCCA
GGGCAATGTCAACCTTGCCGCCTGCTTGCCACTCTACCTCTCCGGCGTCT
GTTGGACCTTTGTCTACGACACGATATGCGCCCACCAGGACAAGCTGGAT
GACCTGCAGATCGGCGTGACTCCACGG
UFO04562.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:54:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Coq2-RA | 1643 | CG9613-RA | 95..914 | 9..827 | 3970 | 99 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:54:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 8315580..8316390 | 819..9 | 3965 | 99.3 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:54:06 has no hits.
UFO04562.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:31:18 Download gff for
UFO04562.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Coq2-RA | 38..866 | 1..827 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:45:08 Download gff for
UFO04562.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Coq2-RA | 86..914 | 1..827 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:33:35 Download gff for
UFO04562.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Coq2-RA | 86..914 | 1..827 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:33:35 Download gff for
UFO04562.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 8315571..8316394 | 1..827 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:45:08 Download gff for
UFO04562.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 4141293..4142116 | 1..827 | 98 | | Minus |
