Clone UFO04563 Report

Search the DGRC for UFO04563

Clone and Library Details

Library:UFO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2008-06-20
Comments:BD Creator expression clones with C-terminus FLAG HA tag for transgenic expression using PhiC31 integrase system
Original Plate Number:45
Well:63
Vector:pUAST-CFLAGHA-BD-PHI
Associated Gene/TranscriptCG10026-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

UFO04563.5prime Sequence

1140 bp (1004 high quality bases) assembled on 2009-06-09

> UFO04563.5prime
CAGTCGACATGCCCACCATCGAGCACAAGCTAAACATCACCGAGGAGGAG
GTTCCGGAGCACATCCGCCGACTTGCCCAGGAGCAGGGAGAGTGTCCCAG
TTCCAAGGATAAGGTCATCGAACAATTCCGTAACTACATACTAGAACATA
ATGAATGCCAACCACACAGAAGTGATGCGAAGTACCTGGAGAAATTCCTA
AGAGCCCGCTACTGGAAAATCGAGAACAGTTACAAATTGCTCTGCAGTTA
CTACAGGTTTCGGGAGCAGAACAAAAGCTTTTATGAGAAGGTTCGTCCTC
TGGACCTGAGACATGTTGGGCAATCGGACATCCTGACAGTGACTCCCTAT
CGGGATCAACATGGCCATAGGATACTCATCTACCGATTCGGACTGTGGCG
ACCCAATCAAGTAACCGTCGACGATATATTTCGCGCCACCATTGTCCTGC
AGGAACTGGGCAGCCTGGAACCCATCTCACAGATTGTCGGAGGAGTGGGA
ATATTCGATCTGAAGGACCTGGGCTTGGAACACATACTCCACCTGAGTCC
CAGCGTGGCTCAGAAGATGATTGCTCTACTAGTGACCTCCATGCCCATTA
GAACATCCGCCCTTCATATTGTAAATCAGAATTGGGTCTTCAACGCGGCA
TTCAAGATATTTAAACCTTTCCTCAACGCCGCTATGCGAGAAAAGCTATA
CATCCATGGCAGTGACATGACTTCCCTGCACAAACACATCAACCCAGAAC
ATCTTCCCAAGCGCTATGGTGGCTTGCACGAGGACTACTCTTATACGCTC
TGGTTGGATATGCTGAAGGAGCAGTGTTCGGGCAATAGTATCCAAAAGGA
TATGGAGCAATTGGGATTCATCTTTGACGCAAGCTTTCTAGACCATTCGT
TTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAAT
CATTATCACACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGAATC
TCACAACAAAAACGCCCGCGGCAACCGAGCGTTCTGAACATTCAGATGGA
GTCTGAGGTCTTACTGATCTATCACAGAGTCAAGCGACTCGATATCAATT
ACGCCCCGCCCTTGCACTCATCCAGTATCGGTGTAATCAT

UFO04563.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:48:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG10026-RD 1143 CG10026-RD 140..1010 8..878 4355 100 Plus
CG10026-RC 1207 CG10026-RC 204..1074 8..878 4355 100 Plus
CG10026-RB 1533 CG10026-RB 530..1400 8..878 4355 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:48:36
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 19456823..19457168 239..584 1730 100 Plus
2L 23513712 2L 19457227..19457406 584..763 900 100 Plus
2L 23513712 2L 19456432..19456568 8..144 685 100 Plus
2L 23513712 2L 19457475..19457590 763..878 580 100 Plus
2L 23513712 2L 19456628..19456724 143..239 485 100 Plus
Blast to na_te.dros performed on 2014-11-28 21:48:37 has no hits.

UFO04563.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:31:19 Download gff for UFO04563.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10026-RC 198..1081 1..886 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:40:42 Download gff for UFO04563.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10026-RB 524..1407 1..886 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:41:30 Download gff for UFO04563.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10026-RB 524..1407 1..886 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:41:30 Download gff for UFO04563.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 19456426..19456568 1..144 97 -> Plus
2L 19456630..19456724 145..239 100 -> Plus
2L 19456824..19457168 240..584 100 -> Plus
2L 19457228..19457406 585..763 100 -> Plus
2L 19457476..19457597 764..886 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:40:42 Download gff for UFO04563.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 19456426..19456568 1..144 97 -> Plus
arm_2L 19456630..19456724 145..239 100 -> Plus
arm_2L 19456824..19457168 240..584 100 -> Plus
arm_2L 19457228..19457406 585..763 100 -> Plus
arm_2L 19457476..19457597 764..886 97   Plus