UFO04563.5prime Sequence
1140 bp (1004 high quality bases) assembled on 2009-06-09
> UFO04563.5prime
CAGTCGACATGCCCACCATCGAGCACAAGCTAAACATCACCGAGGAGGAG
GTTCCGGAGCACATCCGCCGACTTGCCCAGGAGCAGGGAGAGTGTCCCAG
TTCCAAGGATAAGGTCATCGAACAATTCCGTAACTACATACTAGAACATA
ATGAATGCCAACCACACAGAAGTGATGCGAAGTACCTGGAGAAATTCCTA
AGAGCCCGCTACTGGAAAATCGAGAACAGTTACAAATTGCTCTGCAGTTA
CTACAGGTTTCGGGAGCAGAACAAAAGCTTTTATGAGAAGGTTCGTCCTC
TGGACCTGAGACATGTTGGGCAATCGGACATCCTGACAGTGACTCCCTAT
CGGGATCAACATGGCCATAGGATACTCATCTACCGATTCGGACTGTGGCG
ACCCAATCAAGTAACCGTCGACGATATATTTCGCGCCACCATTGTCCTGC
AGGAACTGGGCAGCCTGGAACCCATCTCACAGATTGTCGGAGGAGTGGGA
ATATTCGATCTGAAGGACCTGGGCTTGGAACACATACTCCACCTGAGTCC
CAGCGTGGCTCAGAAGATGATTGCTCTACTAGTGACCTCCATGCCCATTA
GAACATCCGCCCTTCATATTGTAAATCAGAATTGGGTCTTCAACGCGGCA
TTCAAGATATTTAAACCTTTCCTCAACGCCGCTATGCGAGAAAAGCTATA
CATCCATGGCAGTGACATGACTTCCCTGCACAAACACATCAACCCAGAAC
ATCTTCCCAAGCGCTATGGTGGCTTGCACGAGGACTACTCTTATACGCTC
TGGTTGGATATGCTGAAGGAGCAGTGTTCGGGCAATAGTATCCAAAAGGA
TATGGAGCAATTGGGATTCATCTTTGACGCAAGCTTTCTAGACCATTCGT
TTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAAT
CATTATCACACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGAATC
TCACAACAAAAACGCCCGCGGCAACCGAGCGTTCTGAACATTCAGATGGA
GTCTGAGGTCTTACTGATCTATCACAGAGTCAAGCGACTCGATATCAATT
ACGCCCCGCCCTTGCACTCATCCAGTATCGGTGTAATCAT
UFO04563.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:48:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10026-RD | 1143 | CG10026-RD | 140..1010 | 8..878 | 4355 | 100 | Plus |
CG10026-RC | 1207 | CG10026-RC | 204..1074 | 8..878 | 4355 | 100 | Plus |
CG10026-RB | 1533 | CG10026-RB | 530..1400 | 8..878 | 4355 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:48:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 19456823..19457168 | 239..584 | 1730 | 100 | Plus |
2L | 23513712 | 2L | 19457227..19457406 | 584..763 | 900 | 100 | Plus |
2L | 23513712 | 2L | 19456432..19456568 | 8..144 | 685 | 100 | Plus |
2L | 23513712 | 2L | 19457475..19457590 | 763..878 | 580 | 100 | Plus |
2L | 23513712 | 2L | 19456628..19456724 | 143..239 | 485 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:48:37 has no hits.
UFO04563.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:31:19 Download gff for
UFO04563.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10026-RC | 198..1081 | 1..886 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:40:42 Download gff for
UFO04563.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10026-RB | 524..1407 | 1..886 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:41:30 Download gff for
UFO04563.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10026-RB | 524..1407 | 1..886 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:41:30 Download gff for
UFO04563.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 19456426..19456568 | 1..144 | 97 | -> | Plus |
2L | 19456630..19456724 | 145..239 | 100 | -> | Plus |
2L | 19456824..19457168 | 240..584 | 100 | -> | Plus |
2L | 19457228..19457406 | 585..763 | 100 | -> | Plus |
2L | 19457476..19457597 | 764..886 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:40:42 Download gff for
UFO04563.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 19456426..19456568 | 1..144 | 97 | -> | Plus |
arm_2L | 19456630..19456724 | 145..239 | 100 | -> | Plus |
arm_2L | 19456824..19457168 | 240..584 | 100 | -> | Plus |
arm_2L | 19457228..19457406 | 585..763 | 100 | -> | Plus |
arm_2L | 19457476..19457597 | 764..886 | 97 | | Plus |