UFO04564.5prime Sequence
1164 bp (1017 high quality bases) assembled on 2009-06-09
> UFO04564.5prime
CAGTCGACATGGGGAACCAATTGGCTATACAGATGAATAGCGATGAAGAC
GACGATTTTGATTCTTCGGACAACGAGCTGGGCTTCAACGTGATCAACTT
TACGGTGAACGCCATGGATCTGCGCTCCGATTATTGCAGCAGCGAGATGC
CAGTTATACGAGGCAAGCCCGATCTAGTTAAATTTCAGAAAACTGATATG
TACAAGGAGATCCAGGCGTCGAGTGGATTAGTGAGCAATCCGAACAATCG
CTGGAACCTGGTGCACGCCCTTCAGCAGCGTGAGAATGGGTTGGCATCGC
CGCACAGCGCATCGTTCTCCAAGAACCAGCAGCGCTACATATCCAATCTT
TACATACCAAACAAAAAGGCCACACGCCTGATGTCGCTGGAATCCAAAAT
ATTTGTGACCAAGTTCAATCGTTCGGGCAGCAAGTTGCTGACCGCTTGTC
AAGATGGCTTTGTGCGCATTTACGATGGCGCCAAGGGCACTTATCACCTG
CTGAATCGCATCCGAGCCCGCGATGTTGAGTGGAGCATCATCGATGCGGA
TTTTAGTCCGAATGGCGAGCACTTCGCCTACAGCACCTGGTCCCGCTCAT
TGTTCATCATGCCCGTGAATGGGGGGGAAGACGACTGCCAGTGGATCGAT
GTCAATGGACTGCCAAGCCATAGGTTGGCCATCTTCTCGCTGCGCTATTC
GCCAACAGGCGACAAAATCATCGGGGGCAGCAACAATTCCACGGTCATCG
TGACCGACATTCGCACAAGAAACACACAGATCCTGCGCACCCACCGCATG
CCCGGCAAGGATGTTAACTCGGTGTGCTTCCTACACGATAAGGATCCAAA
TGTGATAATCGCCGGCTGTGACGACGGCCTGCTAAAGGTCTACGACCCGC
GCACCACCTTCCGTTCACGGGACTGTCCAGTCTGTGGCATCCTTCATCGG
CCACTACGATGGCATCACCTACATCGATTCGCGGCAACGACGGCTACTAC
GTGGCTGTCCCACTCCAAGAACAAAGCATCAAAATCTGGGACATAGGCAG
CGACATATGCTATCCATCGTTCAACGCAGTCGACCCACCCATGGACTCCG
ATGAACCCGTCCGGATTCAATCGCAAGCCATGGAGATCGCATGGCATCGT
CCGATCCAGCGTGC
UFO04564.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:33:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9945-RA | 1925 | CG9945-RA | 207..1251 | 9..1051 | 5025 | 99 | Plus |
| CG9945-RB | 1949 | CG9945-RB | 81..1125 | 9..1051 | 5025 | 99 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:33:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 20619476..20619925 | 597..1045 | 1935 | 97.8 | Plus |
| 2R | 25286936 | 2R | 20618953..20619220 | 186..453 | 1340 | 100 | Plus |
| 2R | 25286936 | 2R | 20618709..20618888 | 9..188 | 900 | 100 | Plus |
| 2R | 25286936 | 2R | 20619279..20619427 | 452..600 | 745 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:33:24 has no hits.
UFO04564.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:31:21 Download gff for
UFO04564.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9945-RA | 203..1263 | 2..1060 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:48:59 Download gff for
UFO04564.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9945-RB | 77..1137 | 2..1060 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:10:29 Download gff for
UFO04564.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9945-RB | 77..1137 | 2..1060 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:10:29 Download gff for
UFO04564.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 20618705..20618888 | 2..188 | 97 | -> | Plus |
| 2R | 20618956..20619220 | 189..453 | 100 | -> | Plus |
| 2R | 20619281..20619427 | 454..600 | 100 | -> | Plus |
| 2R | 20619480..20619944 | 601..1060 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:48:59 Download gff for
UFO04564.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 16506210..16506393 | 2..188 | 97 | -> | Plus |
| arm_2R | 16506461..16506725 | 189..453 | 100 | -> | Plus |
| arm_2R | 16506786..16506932 | 454..600 | 100 | -> | Plus |
| arm_2R | 16506985..16507449 | 601..1060 | 97 | | Plus |
