UFO04573.5prime Sequence
1060 bp (965 high quality bases) assembled on 2009-06-09
> UFO04573.5prime
CAGTCGACATGTCCCGCTCCCTGCAACGCTTAGTGGGCAGCTGTCGTCGC
TGGGCACAACAGCCCGCAATTCGTCATTATGCCGCTCCCGCAGATTCCAC
TAAAGGCAAGGGTCCGATCTCTTGGAGAAGTCTGGCCGTCATTGGAGCCC
TTGGAGCCGGAGGAGTGGGCTTCATGCTGTACGTGAAGAGCGAGAAGGAT
GAGGCGAGAATGAAGGAGCGTCAGCGGCAATTGGGAAAAGCAGCCATCGG
CGGCAGTTGGGAATTAGTTGATTCGCAGGGAGCTGTTCGCAAATCGGAGG
ACTTCTTAGGCAAGTGGCTGCTCATCTATTTTGGCTTCACCCACTGCCCG
GATATTTGTCCCGATGAGCTAGAGAAGATCGCCGCCGTCGTCGATGAAGT
TGAAAAGTCCCCGCAAACGCCGGCAGTGCAGCCCATCTTTATCACCGTTG
ACCCAGAACGTGACTCCAAAGAGGTGGTGGCCAAATACGTAAAAGAGTTC
TCCCCCAAACTGCTGGGACTCACGGGAACCGTCGAACAAATCCGCAAAGT
GTGCAAGGCCTTCAGGGTTTATTTCAGCGCTGGACCGCGGGACGAGGACA
ACGATTATATTGTGGATCACACCATCATCATGTACCTGGTCAATCCCGAT
GGCGAGTTTGTCGATTACTACGGCCAAAATCGGGACAAGGACCAGTGTGT
GGCATCCATTTTGGTGAACATAGCCAAGTGGAATTCAATGAACAAAAAGG
GATGGTTCAGCGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAG
GTAAGTGGTCATAATCATAATCATAATCATAATCATAATCACAACTAGCC
TAGGAGATCCTGGTCATGACTAGTGCTTGATTCTCACCAATAAAAAACGC
CCGCCGGCAAACGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCA
TACTGGATTTATCACAGCGTTCCAGTGAGCTTCAAATTAAATTACGCCCC
GCCTGCCACTCACTGCAGAACTGTTGTGTATTTCTTTAAGCTTCTGTCGA
ATTGGAAGCA
UFO04573.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:33:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Scox-RA | 1041 | CG8885-RA | 111..863 | 9..761 | 3735 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:33:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 4968432..4968825 | 402..9 | 1955 | 99.7 | Minus |
| 2L | 23513712 | 2L | 4968010..4968369 | 761..402 | 1785 | 99.7 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:33:42 has no hits.
UFO04573.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:31:26 Download gff for
UFO04573.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8885-RA | 106..875 | 1..773 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:49:06 Download gff for
UFO04573.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Scox-RA | 105..874 | 1..773 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:10:40 Download gff for
UFO04573.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Scox-RA | 105..874 | 1..773 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:10:40 Download gff for
UFO04573.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 4967999..4968368 | 403..773 | 98 | <- | Minus |
| 2L | 4968432..4968831 | 1..402 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:49:06 Download gff for
UFO04573.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 4967999..4968368 | 403..773 | 98 | <- | Minus |
| arm_2L | 4968432..4968831 | 1..402 | 98 | | Minus |
