UFO04576.5prime Sequence
1085 bp (966 high quality bases) assembled on 2009-06-09
> UFO04576.5prime
CAGTCGACATGTTACTTCCGCGGTATTTTTGCTGGAACCTCCAACGCTGC
ACGATGGCGTTTTACGCTGTAGCCAGTGGGCGGCGGTCTGGAGTCTACGG
CTCTTGGGCAGAGTGCGAGGAGCAGGTCAAGGGTTTCAAGAACGCCAAAT
ACAAGAAGTTTAAGACACGCCAGGAAGCGGATCAGTTCGTTAATGGCTGC
AAGTCGTATGCTCCGCAGGATGTGGCCGTGCCGCTGGGCAAGGAAAAGGC
GTCACTGGCCAGTTGGAAAAACAGTATCGAAGTGAATAAGAACCCCAAGT
ACACAGATGAGTGGCCCGAAGAGGATCACGACCTAGCCGAGGATGATCTG
AATGCTGCCATGAACGAGGTTGAGGGAGATCCAAAGCCATCTAACAGTAG
CAATTTACCAGACATTCTCAATCGCAAGCGGAAGGGCACGACCAGCGGCG
ATAAGCGGAACAAGATCCCACGTCATGCCTCTCAGGTCTCAGAAGCCACA
GGACTCAAGCAAGTGGGTGCCTTCCAGTTTGAAATCGATGCAGAGGGCTA
TGTCATTGTGTACACAGATGGCTCCTGCATAGGCAACGGACGAGCCGGCG
CCTGTGCCGGCTATGGCGTTTATTTCGGCAAGAATCACCAGCTAAACGCA
GCCAAGCCCGTGGAAGGACGCGTTACAAATAATGTAGGTGAAATACAAGC
GGCCATTCATGCCATTAAAACAGCTCTTGACTTGGGAATACAGAAGCTGT
GCATCAGCACAGACTCTCAGTTTTTGATCAACTCCATAACGCTGTGGGTT
GCGGGTTGGAAAAAAGGGATTGAAGCTAAAGAACAATCAGCCTGTAAAAA
CGTTGTTGACTTCAAGGAACTGGATAAACTGCTTCAGAGACACATCACCG
TGAATGGACTATGTGGAGGCCCACAGGGCATAAGGGCATGAATGCCGACA
ATTGGCGCGGCAGGATCGGCTTGTATAACCAAAATGGGTGCAAGCTTTCT
AACAATTCGTTGGCCGGCGGGCCAGGTAGTGTCTATCCCAATTCCTATCA
TATCACTAGCCTAGAGATCTGCTGACATGCTTGAA
UFO04576.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:14:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| rnh1-RA | 1108 | CG8729-RA | 32..1017 | 9..978 | 4470 | 98 | Plus |
| rnh1-RB | 1051 | CG8729-RB | 374..960 | 408..978 | 2475 | 96.6 | Plus |
| rnh1-RB | 1051 | CG8729-RB | 32..373 | 9..350 | 1710 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:14:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 7932008..7932349 | 350..9 | 1710 | 100 | Minus |
| 2R | 25286936 | 2R | 7931611..7931846 | 643..408 | 1150 | 99.2 | Minus |
| 2R | 25286936 | 2R | 7931309..7931555 | 887..644 | 1085 | 98.8 | Minus |
| 2R | 25286936 | 2R | 7931899..7931956 | 407..350 | 290 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:14:32 has no hits.
UFO04576.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:31:27 Download gff for
UFO04576.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rnh1-RA | 38..1029 | 9..984 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:08:16 Download gff for
UFO04576.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rnh1-RA | 32..1023 | 9..984 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:42:38 Download gff for
UFO04576.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rnh1-RA | 32..1023 | 9..984 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:42:38 Download gff for
UFO04576.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 7931285..7931555 | 644..907 | 97 | <- | Minus |
| 2R | 7931611..7931846 | 408..643 | 99 | <- | Minus |
| 2R | 7931899..7931955 | 351..407 | 100 | <- | Minus |
| 2R | 7932008..7932349 | 9..350 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:08:16 Download gff for
UFO04576.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3819404..3819460 | 351..407 | 100 | <- | Minus |
| arm_2R | 3818790..3819060 | 644..907 | 97 | <- | Minus |
| arm_2R | 3819116..3819351 | 408..643 | 99 | <- | Minus |
| arm_2R | 3819513..3819854 | 9..350 | 100 | | Minus |
