UFO04577.5prime Sequence
1145 bp (993 high quality bases) assembled on 2009-06-09
> UFO04577.5prime
CAGTCGACATGAAGATCCTGATGCGAGCGGACACCCATGTGTCCTTCTCC
GTGCCCGCCGATGGGCTCAAGGCCAATTTTACCTTTTCCCAGGTCTTGGC
TGCTCTGAGTGTCTCGCTGTGCTCCTTGGTGGTCGGATTTGTCAGCGCTT
ACACGTCGCCTGCACTTGTGTCGATGACCGATCGAACCATCACCTCCTTT
GAGGTCACAAAAGATGCTGGTTCCTGGGTTGGTGGCATCATGCCACTGGC
TGCATTAGCAGGTGGCATAACAGGAGGACCCTTGATCGAATATCTGGGCA
GGCGCAGCACCATCCTGGCCACTGCGGTGCCCTTCATCGTATCATCACTG
CTGATTGCGTGTGCTGTGAATGTGATCATGATTCTGTGCGGACGATTCCT
AACTGGATTCTGCGTTGGCATTGCCTCTTTATCCCTGCCCGTCTATCTGG
GTGAGACTTTGCAGCCGGAAGTGCGGGGCACTTTGGGTTTGCTGCCCACC
GCTCTTGGTAACATAGGCATCCTGGTTTGCTATGTGGCGGGATCCTTTAT
GAATTGGTCGATGCTGGCCTTCTTGGGAGCTGCTCTGCCCGTTCCCTTCC
TGATTTTGATGATCATTATCCCCGAAACTCCGCGCTGGTTTGTGAACCGT
GGTCAGGAAGAGCGCGCCAGGAAGGCTTTGAAATGGCTGCGTGGCAAGGA
GGCGGATGTGGAGCCCGAACTAAAGGAGTTGATGCAATCTCAGGCCGATG
CCGATCGTCAGCCACTCAGACACCTGTTTGGAGCTGTTTAAGCGAAACAA
TCTGAACCACTTTCCATTTCCTTGGGTCTGATGTTCTTTCACAGTTCAGC
GGTATCAACGCGGTTATCTTCTACACGGTCCGATGTCCAGGATGCGGGAT
CCACAATTGATAGCATCTTTCACGATCATCGTGGGTGTAGTTACTTTTTG
CTACGTTAGGGCATCATCTGATTGATCGGTGGCAAAAGATCCTCTGAAGT
CGCAAATCCGCTGATCGGACCTGTCCATCGGGGGCTTCTTCACCTAGGGC
CTGCCCGAAGTGTCCCTTTGGTGGTGCCCCCTGCTCTTATCATCCGGATC
TCCTGGCTCGACCTTTCCTGTTGATAGTGAATATCTCTCGGCAAT
UFO04577.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:57:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tret1-2-RA | 1695 | CG8234-RA | 113..1097 | 9..980 | 4510 | 98.1 | Plus |
| Tret1-1-RB | 1980 | CG30035-RB | 160..1143 | 9..979 | 3320 | 90.2 | Plus |
| Tret1-1-RA | 3132 | CG30035-RA | 1393..2295 | 90..979 | 3020 | 90 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:57:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 11676526..11677258 | 219..943 | 3205 | 98.4 | Plus |
| 2R | 25286936 | 2R | 11673045..11673747 | 219..915 | 2305 | 90.2 | Plus |
| 2R | 25286936 | 2R | 11676201..11676338 | 82..219 | 630 | 97.1 | Plus |
| 2R | 25286936 | 2R | 11672706..11672843 | 82..219 | 510 | 91.3 | Plus |
| 2R | 25286936 | 2R | 11676047..11676132 | 9..94 | 430 | 100 | Plus |
| 2R | 25286936 | 2R | 11672215..11672300 | 9..94 | 325 | 91.9 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:57:57 has no hits.
UFO04577.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:31:28 Download gff for
UFO04577.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8234-RA | 78..1092 | 1..996 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:23:33 Download gff for
UFO04577.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tret1-2-RA | 103..1117 | 1..996 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:47:11 Download gff for
UFO04577.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tret1-2-RA | 103..1117 | 1..996 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:47:11 Download gff for
UFO04577.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 11676037..11676130 | 1..92 | 95 | -> | Plus |
| 2R | 11676212..11676337 | 93..218 | 98 | -> | Plus |
| 2R | 11676526..11677311 | 219..988 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:23:33 Download gff for
UFO04577.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 7563542..7563635 | 1..92 | 95 | -> | Plus |
| arm_2R | 7563717..7563842 | 93..218 | 98 | -> | Plus |
| arm_2R | 7564031..7564816 | 219..988 | 97 | | Plus |
