UFO04579.5prime Sequence
1117 bp (980 high quality bases) assembled on 2009-06-09
> UFO04579.5prime
CAGTCGACATGAAATTTTTCGTTGCACTCGCTCTCTTTGCGTGCCTCGGC
TCTCTTGCCTTGGCCAAGGATGATGAATATTGCCAGAACACTGTAATCAC
CGCATGCTCTACGTCAGCCTTTTCGGCCAACTCCATTTGTAATGCCCGTT
TTGCTGGCATTGACCATATTGAGCCCGAGATCCAGTCCTACATCAACGCC
AACTTGGCCAAGTCGTACGACTACCTCCTGCTGGCCACCCACTTCAACTC
CTACCAGAAGAACCGCCCCGGCTTCCAGAAGCTGTACCAGGGACTCTCGG
ACCGCTCCTTCGAGGACAGCATTGCCCTGATCAAGCAGGTGACCCGTCGC
GGAGGAATCGTTGACTTCAACACCCGCCACGAGTCTTCCGGCTCCGTGAG
CACCAAGCGCGGCACTCTTGAGGTCGACGAACTGCACTCCCTGGCTCTGG
CTCTGGACACCGAGAAGCAGCTGGCCACCGGAGCCACTCACGTGCACTCC
CGTGCCACCCACGCCACCGACGCCGAGAGGGATCCCGAGCTGGCCCACTA
CTTCGAGGAGAACTTCCTGGGCAAGCAGGCCGAGAGCGTGCGCAAGCTGT
CCGGTTATGCCAACGACCTCGCCAAGCTGATGAAGGTCCCCGACCCATCC
CTGTCCGTCTACCTGTTCGACGAGTATCTGCAGAAGCAGGCAAGCTTTCT
AGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATC
ATAATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTA
GTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCT
GAACAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGA
GTCCAGCGAGCTCGATATCAAATTACGCCCCGCCCTGCCACTCATCGCAG
TACTGGTGTAATTCATAAGCATTTTGCGGACAGGAAAGCATCACAAACGC
ATGATGAACTGATCGCCAGGCGCATCAGCCACTTGTCGCCTGGCGTAAAA
TGGCCATGGGTGAACGGGGGCGAGATGTCTATTGGGCCGGTAATCAAACT
GGTGACTCCCAGGAGTG
UFO04579.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:07:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Fer2LCH-RD | 1091 | CG1469-RD | 80..766 | 3..689 | 3420 | 99.9 | Plus |
| Fer2LCH-RC | 1078 | CG1469-RC | 67..753 | 3..689 | 3420 | 99.9 | Plus |
| Fer2LCH-RB | 1443 | CG1469-RB | 432..1118 | 3..689 | 3420 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:06:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 30389696..30390259 | 126..689 | 2805 | 99.8 | Plus |
| 3R | 32079331 | 3R | 30389205..30389328 | 3..126 | 620 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:07:00 has no hits.
UFO04579.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:31:29 Download gff for
UFO04579.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fer2LCH-RC | 65..757 | 1..694 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:34:01 Download gff for
UFO04579.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fer2LCH-RB | 430..1122 | 1..694 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:48:12 Download gff for
UFO04579.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fer2LCH-RB | 430..1122 | 1..694 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:48:12 Download gff for
UFO04579.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 30389203..30389328 | 1..126 | 99 | -> | Plus |
| 3R | 30389697..30390263 | 127..694 | 99 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:34:01 Download gff for
UFO04579.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 26214925..26215050 | 1..126 | 99 | -> | Plus |
| arm_3R | 26215419..26215985 | 127..694 | 99 | == | Plus |
