UFO04582.5prime Sequence
1122 bp (999 high quality bases) assembled on 2009-06-09
> UFO04582.5prime
CAGTCGACATGATGCAAGAGACCGGCAATCAAATGGGACAGACCCATATG
CACCAGCGGGTTCCTTTCAACGACACGGTTCTGAAGGACTATCATCTCAC
GAGCACCGATATCGAGAAGTTTGTAAAGCTATGGCAGGAGTACCAGATGA
AGAACATGACCCCTCAGGTGGATGAGTGCCAGGGCTATTGCCAGGGGGAA
ATATACAACTGGTTGCGAGCCTACAACAGCATCCATGGATACGTTTCGCT
GATGATTTGCATTTTCGGGACAATAGCAAACATCTTGAACATAATGGTCC
TGACCAGAAAGGAAATGGCCAAGACGCCCATAAATAATATACTTAAGTGG
CTGGCGGTGGCCGATATGTTTGTGATGCTGGAATATATACCCTATACATC
GTATCAGTATATCTATATGGGGCCAGGTGAAAAAGATTTGAGCTACACCT
GGGCGGTTTGTCTGCTGGTTCACATGCACTTCACGCAGATCCTGCATACG
ATTTCCATCGGACTGACTGTCACGCTGGCGGTGTGGCGGTATGTGGCTAT
CAGACATCCGAACGGGGGCTGTGCCAATTTCCTGCTAGCACATTCCCGGG
AGGCGATCCTCCTGCCCTTCATCCTGTCGCCGATCCTCTGCCTGCCCACG
TACTTTGTGTTCCAGGTGCGTGAGACGTACGACGTGGACAAGGTCAACTC
GGAGGCCATGTATCACGTTTACTTCGATAAGGACTCGGTGCTCTACAGAT
TCAACTTCTGGATACATTCCGTGCTCATCAAACTTCTGCCGTGCGGCATA
TTAATTGTGATCAGTGCAGTACTTATGCACGTTTTGTGCGAGGCATCGAG
ACGTCGCTTGAAGCTGAGGGATTACAACAATCCCGCCAAATATGCCATCC
AGCTTAATTTGAATGAAACCAAATCCAAGAAGCCTCCTCGCTGGTGATCG
CCCGAAACGATCGGACTACCCTTTGCTGGTTGCGGTGCTTGGGTTTGTTT
CTGAACACAAAAGTTCCGCAGGATTACTTGTCTGCTGGTCCGGAATGATG
GAAAAAATGCTTCCTCGCCCCCTGCTATCGCCGTTTGGAGAGCTGATGAT
CTGCTGGGCCTGAATCACGCCG
UFO04582.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:35:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13229-RC | 2361 | CG13229-RC | 391..1489 | 9..1107 | 4955 | 97.2 | Plus |
| CG13229-RB | 2509 | CG13229-RB | 539..1637 | 9..1107 | 4955 | 97.2 | Plus |
| CG13229-RA | 1557 | CG13229-RA | 152..1250 | 9..1107 | 4955 | 97.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:35:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 11142684..11142929 | 254..9 | 1230 | 100 | Minus |
| 2R | 25286936 | 2R | 11140800..11140997 | 748..551 | 945 | 98.5 | Minus |
| 2R | 25286936 | 2R | 11140530..11140717 | 932..745 | 925 | 99.5 | Minus |
| 2R | 25286936 | 2R | 11141677..11141851 | 428..254 | 860 | 99.4 | Minus |
| 2R | 25286936 | 2R | 11141210..11141339 | 553..424 | 620 | 98.5 | Minus |
| 2R | 25286936 | 2R | 11140186..11140333 | 1098..952 | 210 | 86.8 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:35:06 has no hits.
UFO04582.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:31:24 Download gff for
UFO04582.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13229-RA | 143..1265 | 1..1122 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:37:29 Download gff for
UFO04582.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13229-RA | 143..1265 | 1..1122 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:14:00 Download gff for
UFO04582.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13229-RA | 143..1265 | 1..1122 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:14:00 Download gff for
UFO04582.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 11141679..11141850 | 255..426 | 99 | <- | Minus |
| 2R | 11142684..11142937 | 1..254 | 98 | | Minus |
| 2R | 11140531..11140713 | 749..931 | 99 | <- | Minus |
| 2R | 11140800..11140994 | 554..748 | 98 | <- | Minus |
| 2R | 11141210..11141336 | 427..553 | 98 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:37:29 Download gff for
UFO04582.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 7028036..7028218 | 749..931 | 99 | <- | Minus |
| arm_2R | 7028305..7028499 | 554..748 | 98 | <- | Minus |
| arm_2R | 7028715..7028841 | 427..553 | 98 | <- | Minus |
| arm_2R | 7029184..7029355 | 255..426 | 99 | <- | Minus |
| arm_2R | 7030189..7030442 | 1..254 | 98 | | Minus |
