UFO04583.5prime Sequence
1017 bp (915 high quality bases) assembled on 2009-06-09
> UFO04583.5prime
CAGTCGACATGTCGCATCATCAACACGTTCTTTCCGAGGCCGCTGCCCTT
CGTCTGATTAACGGTCTGGAGTCAGCCGGCAATGCCACAATGCCACTCGG
CGCTCAGCCGCCTCAGTCAGCGGCAGCTGAAGCAATCTGCTCGTCGCAAA
TCGTAGCATCGGCACATGGCACGCCCACTGCATCCACGGCAGCACTGGAA
ATATCCTCAGCACGACAACGGATGCTGCGAAGTCACCTACAGGAGAGCCT
CCATTCGGCGAACGAAAGCGGCAACTCGTGCCGCATCTGCCGCTGGAACC
GCAACGACATGGAGATCATCAAATGTCCCTGCAACTGCAAGGGCAGCGTG
TGCTTGAAGCGCTGGATCATGCACAGGCGGGATAATCGCTGTGAGATCTG
CAATGCGGTCTTTAATATCGCGGAGGAGCGGGCCAGTCTGAAGCAAATGA
TCCGAACCTTCTGCTGCGGCCGTTGTTGCGGCCTGATTGTGAAGCATCTG
CTATTTAGCGCCTCGCTAATGCCACTAGCCCATATCATCTTGCAGCAGGT
GCTGCAGTGCATGGATAATATGAATCAGGGCAGCACCGATCAGTTAACCG
TCCAGGAGGTGTTTGTCGCCTCTTGTGCCCTTCTGACCTCCAGTGCACTT
TTCTTCCACTTCTTTGAGTTTGTCACCACACGATTTATGCTCATCCGGAA
CATTCTCAGCCACTGGTGGATGTTTGGCAGCACCTCCGATTTTGAGCTGG
TGGAGATTGAGATGATTCCATCGATTTTTTCGATGATGCAAGCTTTCTAG
ACCATTCGTTTGCGCGCGGGCCCAGGTAGTGGTCATATCATATCATATCA
TAATCATATCACACTAGCCTAGAGATCCTGGTCATGACTAGTGCTGATCT
CACCATAAAAAACGCCGCGCACCGACGTCTGACAATTCAGATGAGTCTGA
GTCATACTGGATCTATCACAGAGTCCAGCGAGCTCGAATTCCAATACGCC
CGGCTGCACTCATCGCA
UFO04583.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:35:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17717-RB | 1074 | CG17717-RB | 202..981 | 9..787 | 3830 | 99.5 | Plus |
| CG17717-RA | 1092 | CG17717-RA | 202..999 | 9..787 | 3640 | 97.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:35:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 6589491..6589832 | 9..350 | 1680 | 99.4 | Plus |
| X | 23542271 | X | 6590311..6590553 | 546..787 | 1150 | 99.2 | Plus |
| X | 23542271 | X | 6590050..6590251 | 350..551 | 1010 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:35:12 has no hits.
UFO04583.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:31:25 Download gff for
UFO04583.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17717-RB | 194..985 | 1..793 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:37:33 Download gff for
UFO04583.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17717-RB | 194..985 | 1..793 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:14:02 Download gff for
UFO04583.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17717-RB | 194..985 | 1..793 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:14:02 Download gff for
UFO04583.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 6590051..6590248 | 351..548 | 100 | -> | Plus |
| X | 6590314..6590557 | 549..793 | 97 | == | Plus |
| X | 6589483..6589832 | 1..350 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:37:33 Download gff for
UFO04583.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 6484084..6484281 | 351..548 | 100 | -> | Plus |
| arm_X | 6484347..6484590 | 549..793 | 97 | == | Plus |
| arm_X | 6483516..6483865 | 1..350 | 98 | -> | Plus |
