UFO04585.5prime Sequence
1110 bp (1012 high quality bases) assembled on 2009-06-09
> UFO04585.5prime
CAGTCGACATGGAATGGCATCTCGTTTGCTGCGTGCTGGCTTGCACTTTA
GTTTCGACCCAAGTATATGGCCAAGAACAGGAGAAAATTGTGCTTTCCCT
GCCGGATGAAAGTGGTCAACCGGGCAAAAATCTCACTCTCGATGTGGCAC
AGCTGGCCAAGATAGTTCTTCCATCACCACATGAAACTCGCGTAATTGGC
GGCCATGTGACCACAAATGCCAAGTTGGGAGGATACCTAACAGCCTTGCT
TTATGAAGACGATTTTGTTTGTGGCGGTACATTGCTCAACGAAAACATCG
TCCTGACGGCGGCTCACTGTTTTCTGGGTCGAATGAAGGCGAGCGAATGG
ATTGTGGCTGCCGGCATTTCGAATCTCAATCAAAAGGGTATTCGACGCCA
TGTTAAGGACTTCATCCTGTCCGAGCAATTTCGAGAGGACGACATGAATA
TGGATGTAGCAGTGGTACTGCTGAAAACTCCATTGAAGGCTAAAAACATC
GGAACACTGAGCTTATGTTCGGTGAGCCTTAAGCCAGGCGTAGAACTGGT
GGTTTCCGGATGGGGCATGACCGCTCCCCGAGGACGTGGGCCCCACAACT
TACTACGTACGGTGACAGTGCCAATTATTCACAAAAAGAACTGTCGCGCT
GCCTATCAGCCCACGGCTAAAATAACCGACAGTATGATATGTGCTGCAGT
GCTGGGACGTAAGGATGCGTGCACCTTTGACTCAGTGGGCCGTTGGTGTT
CAAAAAGCATGTGTGTGGCATAGTGTCCTTTGGCATTGGATGTGCTAGCA
ACCGTTATCCTGGCGTCTACACGGATGTTATGTACGTGAAGCCTTTTATC
GAGAAAAGCATTAAAGCTTTGCTAGCAAACGAGCAAGCTTTCTAGACCAT
TCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATATCAT
ATCATATCACACTAGCCTAGAGATCCTGGTCATGACTAGTGCTTGGATTC
TCACCAATAAAAACGCCCGGCGCACGAGCGTCCTGAACAAATCCGAATGG
AGTTCTGGAGGTCTTACTGGATCTATCACAGGGTCCAGCGAACCGGAATC
AATAGCCCGC
UFO04585.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:54:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11037-RA | 913 | CG11037-RA | 3..874 | 9..879 | 4320 | 99.8 | Plus |
| CG10588-RB | 3727 | CG10588-RB | 3504..3718 | 879..666 | 1035 | 99.1 | Minus |
| CG10587-RA | 866 | CG10587-RA | 560..834 | 606..879 | 450 | 78.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:54:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 20960723..20961384 | 670..9 | 3295 | 99.8 | Minus |
| 3L | 28110227 | 3L | 20960437..20960651 | 879..666 | 1010 | 99.1 | Minus |
| 3L | 28110227 | 3L | 20961569..20961776 | 879..673 | 345 | 78.8 | Minus |
| 3L | 28110227 | 3L | 20955805..20955968 | 873..711 | 290 | 79.9 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:54:14 has no hits.
UFO04585.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:31:33 Download gff for
UFO04585.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11037-RA | 1..881 | 8..886 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:45:16 Download gff for
UFO04585.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11037-RA | 1..881 | 8..886 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:33:41 Download gff for
UFO04585.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11037-RA | 1..881 | 8..886 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:33:41 Download gff for
UFO04585.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 20960429..20960650 | 667..886 | 97 | <- | Minus |
| 3L | 20960727..20961393 | 1..666 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:45:16 Download gff for
UFO04585.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 20953529..20953750 | 667..886 | 97 | <- | Minus |
| arm_3L | 20953827..20954493 | 1..666 | 99 | | Minus |
