UFO04588.5prime Sequence
1119 bp (1003 high quality bases) assembled on 2009-06-09
> UFO04588.5prime
CAGTCGACATGTTCTCAGGACTTATACCCATGATGCAGCAGACTCGGAGG
GCCACGGTTCCACTAGGTGGGGACAGCCGAAGTGGCAACACCGAGTCCCA
AATTGGATCCAGTAAATCTTCTAATTGCAGATTGCACCTAATTTCGCGAA
CCGGAAAGCTTCTTCTGGACTACAAGCAATACAAGGCAGCCCGAACTATC
CAAAACAACTGGCGGAAATTCTATTTTCGAAAGTATTTCAAGGATCTAAG
AAAGGCGGTCATCACGATTCAGCGCTGGTGGCGCGGATTCTCGGTCCGAA
AAAACCACTTCAGGTATGTGGAGAACCTGCTGCAGAAGCGGGTTCAGGAT
CACCACCATCGGGCGGCCACCAAGATCCAGGCCCTATTCCGAGGATGGAA
GAGCCGGCGCACCATTCACGATCACAGCAAATTGCTCAGGAAGCAGGTGT
GCGCCGCCGAGGATCTGCTCAATTGCGTGGCCTTCAAGCTGCACCACCTG
CTCCGCACCTTCGCGATTCCAGGTGTATATTCGCTCAAGAACTCAAACTG
CATGTCGCGAGTAGAGAAGCTGCTGGCCAGCTTGCATTTTCGCTTCCACA
ATGGAAGGGTTAAGACGCAACTGGCTAAAGAACTGGCCGATCGAGGAAAG
GATACGGAAACTTTCAAGAGGAGCAACAAGTTCAGCAAAGTCCCATTCGA
AGGAGCCCGCTATTGGAGCCAATGCAAGCCAAAGTGCGAGGCCGCCCTGA
AAATGTCCAAGAATATTGAAAGGCGCATGTACAGAATCATCGAGATTTAC
GATGCTTCACAGAGAGAAGCCCATGCGGCGTTGGTCGAAAAGATAGGGCG
TACAGAAAGCACAAGGGGCTTATGCAGAACATCAGAAATCGGCGGAGAAG
AGTAAACGCGACTCTGCGCGATGTCATCGCCAGTATGAGACGCTGAAAAT
CCTGGTGACAACGATTTGACTGTGAAAAGAACATGTCAAAACCCGCAAAT
TTGGAGAGGGTCGTGCTGAAATTCGCATTGCAATGGAGTCAGAACTGCCC
CTGCTATGCGCATCCCGTTTCACGAATCTTTTGGCGGCAAGCCTTCAGAA
CATCGTTGGGCGGCCAGGT
UFO04588.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:34:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13544-RA | 1262 | CG13544-RA | 100..1164 | 9..1057 | 4745 | 97.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:34:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 23139820..23140219 | 547..148 | 1970 | 99.5 | Minus |
| 2R | 25286936 | 2R | 23139452..23139765 | 860..548 | 1475 | 98.7 | Minus |
| 2R | 25286936 | 2R | 23139271..23139395 | 974..855 | 360 | 95.2 | Minus |
| 2R | 25286936 | 2R | 23140408..23140478 | 79..9 | 355 | 100 | Minus |
| 2R | 25286936 | 2R | 23140284..23140353 | 148..79 | 350 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:34:41 has no hits.
UFO04588.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:31:34 Download gff for
UFO04588.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13544-RA | 103..1145 | 1..1033 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:37:12 Download gff for
UFO04588.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13544-RA | 96..1138 | 1..1033 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:13:50 Download gff for
UFO04588.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13544-RA | 96..1138 | 1..1033 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:13:50 Download gff for
UFO04588.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 23139271..23139395 | 855..974 | 95 | <- | Minus |
| 2R | 23139458..23139765 | 548..854 | 99 | <- | Minus |
| 2R | 23139820..23140218 | 149..547 | 99 | <- | Minus |
| 2R | 23140284..23140352 | 80..148 | 100 | <- | Minus |
| 2R | 23140408..23140482 | 1..79 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:37:12 Download gff for
UFO04588.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19027931..19028005 | 1..79 | 94 | | Minus |
| arm_2R | 19026794..19026918 | 855..974 | 95 | <- | Minus |
| arm_2R | 19026981..19027288 | 548..854 | 99 | <- | Minus |
| arm_2R | 19027343..19027741 | 149..547 | 99 | <- | Minus |
| arm_2R | 19027807..19027875 | 80..148 | 100 | <- | Minus |
