UFO04593.5prime Sequence
1139 bp (1013 high quality bases) assembled on 2009-06-09
> UFO04593.5prime
CAGTCGACATGTATCACTACCAGCAAGGCGATGAAACTGGCGCATACACA
GATGCGGAAGCGGACAAGAGCTTCGCCTTCGATGACCAGAGCATCCGGAA
GGGATTTATTCGAAAGGTCTACTTGATATTGATGTGCCAATTGCTGATCA
CTTTCGGTTTTGTTAGCGTATTTACGTTCTCGAAAGCTTCGCAGGAATGG
GTGCAAAAAAATCCGGCACTGTTTTGGATAGCCTTGGCCGTTCTTATCGT
GACCATGATCTGTATGGCCTGCTGCGAAAGTGTACGCCGTAAGACGCCTC
TTAACTTCATCTTTCTTTTCCTGTTCACCGTGGCGGAGTCGTTCCTTCTG
GGTATGGTCGCCGGACAGTTTGAGGCTGATGAGGTCCTGATGGCAGTGGG
AATTACGGCCGCGGTGGCCCTGGGACTCACCCTGTTTGCCCTGCAGACCA
AATACGATTTTACGATGTGCGGAGGAGTGTTGGTGGCCTGTCTGGTGGTC
TTCATCATTTTTGGCATAATCGCTATCTTCATCCCAGGCAAGGTGATCGG
ACTGGTCTATGCCTCCTTGGGAGCATTGCTCTTCTCCGTTTACTTGGTGT
ACGATACCCAGTTGATGCTGGGTGGTAATCATAAGTACTCCATCAGTCCT
GAGGAATACATCTTCGCCGCTCTAAACCTCTACCTGGACATTATTAACAT
CTTCATGTACATACTGACCATTATCGGATTGTCTCGCAATGCAAGCTTTC
TAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAAT
CATAATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACT
AGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTC
TGAACAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGG
AGTCCAAGCCGAGCTCGATATCAAATTACGGTCGGCTGCAATCATCGCAG
TACTGGTTGTAATTCATTAAGCATTCTGGCCGACATGGAAGCCATCCAAC
GCATGATGACTGAATCGCCAGCGGCATCGACCTGTCGCCTGCTTATATTG
CATGGTGAAACCGGGGGGAGATTGCCATTGCCGTTTATC
UFO04593.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:16:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3814-RB | 1020 | CG3814-RB | 177..908 | 9..740 | 3615 | 99.6 | Plus |
| CG3814-RC | 1011 | CG3814-RC | 185..899 | 26..740 | 3530 | 99.6 | Plus |
| CG3814-RD | 933 | CG3814-RD | 132..821 | 51..740 | 3405 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:16:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 12875276..12875780 | 740..236 | 2480 | 99.4 | Minus |
| 2R | 25286936 | 2R | 12876101..12876209 | 134..26 | 545 | 100 | Minus |
| 2R | 25286936 | 2R | 12875841..12875944 | 237..134 | 520 | 100 | Minus |
| 2R | 25286936 | 2R | 12877671..12878016 | 727..382 | 395 | 74.3 | Minus |
| 3R | 32079331 | 3R | 14152993..14153147 | 712..558 | 295 | 79.4 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:16:15 has no hits.
UFO04593.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:31:37 Download gff for
UFO04593.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3814-RB | 177..908 | 9..740 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:01:51 Download gff for
UFO04593.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3814-RB | 177..908 | 9..740 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:47:21 Download gff for
UFO04593.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3814-RB | 177..908 | 9..740 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:47:21 Download gff for
UFO04593.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 12875276..12875779 | 237..740 | 99 | <- | Minus |
| 2R | 12875842..12875943 | 135..236 | 100 | <- | Minus |
| 2R | 12876101..12876207 | 28..134 | 100 | <- | Minus |
| 2R | 12876772..12876790 | 9..27 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:01:51 Download gff for
UFO04593.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 8762781..8763284 | 237..740 | 99 | <- | Minus |
| arm_2R | 8763347..8763448 | 135..236 | 100 | <- | Minus |
| arm_2R | 8763606..8763712 | 28..134 | 100 | <- | Minus |
| arm_2R | 8764277..8764295 | 9..27 | 100 | | Minus |
