UFO04594.5prime Sequence
936 bp (810 high quality bases) assembled on 2009-06-09
> UFO04594.5prime
CAGTCGACATGGAACACAGAGTTGAATTGATGTTGGAACCCATAGTGGCG
GGCAAGTTGGAGCGCAGATCGGATAACAGATCAAACAAGGTGGAGGATGA
GGAGCCGCATCTAACCAAGCAGCTCAAGAAGCACTACGGGATTGAGGCAG
AAGTTCTGGGTCTCCTTGTCAAGTTAGAGATGCGTTATAAGGAATACTAC
AATCTATACAAGTGCGAAATGAAGGCCCAAAAGATACTGGTTGAACGGAT
ATGGCTGCTAACCCAGCGATATCTGATTCTAATCAGTTCAGAGCAGAGCT
GTCGCTATCCCGAAGTGTACACCTTGTCCACCGAGGAGGCCATTATCAAT
GAATATGAGGAAAAATTGGAAGTGCTGCGAGCTTCAAACAACAAAATGAA
AAACACCCTGTTGGAAATCAATCAGCAGTGCAAGGAGTTCTATGCCGCCT
ACGAACGGCTGGACAAGGCACAGGAAACGCCTTTCATCATGGGCGATAGC
CATCATAGAAGCATCAAGTACCACAAGATCATGGCCGTCGACATATTCAA
CTATTTGTATGCAACAGTGCTGAAGCTCAAGTGCTTCATGCATCAGCTGG
ATCCCGTGAATCTGGAGAGTGTCGAGGAATACCGCGATCTGCTCCAAAAC
GAATCCGCCATGGAGGAGTTTGAGGAGTATCTTAACAATCAATTTGTCTA
CTGCAAGTGTAATCTACCCGATTCCAACCTGCCCCATCTTGAAGCTGAAG
TGTTCCCACAAAACATAGCAATTTAAAGTATGTCAGTCGCATCGCAAGCT
TTCTAGACATCGGTTGCGCGCGGCCAGTTAGTGTTCATAATCATATCATA
TTCATATCATATCACACTAGCTAGAGATCCTGGTCATGACTAATGCTTGA
TCACATAAACGTACGCAACGAACGTCTGACATCGAT
UFO04594.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:56:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31910-RA | 905 | CG31910-RA | 81..866 | 9..793 | 3815 | 99.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:56:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 6745163..6745542 | 388..9 | 1900 | 100 | Minus |
| 2L | 23513712 | 2L | 6744702..6745107 | 793..389 | 1840 | 98.5 | Minus |
Blast to na_te.dros performed 2014-11-28 19:56:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TART-A | 13424 | TART-A 13424bp | 2005..2063 | 353..410 | 112 | 67.8 | Plus |
UFO04594.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:31:31 Download gff for
UFO04594.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31910-RA | 68..862 | 9..799 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:56:13 Download gff for
UFO04594.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31910-RA | 81..875 | 9..799 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:33:31 Download gff for
UFO04594.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31910-RA | 81..875 | 9..799 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:33:31 Download gff for
UFO04594.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 6745163..6745542 | 9..388 | 100 | | Minus |
| 2L | 6744702..6745107 | 389..793 | 98 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:56:13 Download gff for
UFO04594.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 6744702..6745107 | 389..793 | 98 | <- | Minus |
| arm_2L | 6745163..6745542 | 9..388 | 100 | | Minus |
