UFO04601.5prime Sequence
1140 bp (1044 high quality bases) assembled on 2009-06-30
> UFO04601.5prime
CAGTCGACATGTCCCAGACAAATCCGAAACCAAGTGATACGCAATCACTG
CGCTGTTTGCACTGCATGAAGGTGATCCGTTGCTCCCGCTACGACACCAG
TGAACTGGTGCGACACATCCAACAGGATCATCCGGAGATATACGCAGTGA
CCACGGATAAAATCAAGAATCTGCACAAGCTGGCCGCGGATCACGGCATC
AGTGAGGAGCGGCTCTCGAAGATTAGCAAGATGACGGGTCTGTCCGAGTC
CCAGATGGCCGAAAAGGCAGAGAAATATATGGCCAAAAAGAAGAATTATG
GTCGCAGTGGTGGATCTGTCGCCGGTGACCCTGCTGCCGTCAGTGAAGCC
GCCTCCTACAAAACCGAGAAGCCCAGCTCCCCATGTCCATGTTCACGTCC
ATTGGAGAACTCGACGTCGCATCGGAGGAAATGCTATCGCGCCTCCATCG
AACGCTGGGCACCGGCGGAGGGGCGCATCTTTTGTCCGTGCTGCGCGACC
AGCAGGCGGCCGCTTATCAAGGCTGCCACTGAGATCTCGAACAACGGCTG
CTGTGCCGCCTGGGTGGTCTCCTGCTGGCCTCTGTGCTTCCTGCCCTGCC
TCATGTCCGCGGACAACAATGAGTACCTGTACTGCGCCAATTGCCGCGCC
TTTCTGGGCATCTACAATCGCGAGAAAAGCTGTGTGCAGCCCAGCAAGGA
GTTTGTGTCCTGCAGCAAGTCGGTCACGGCCCCGCTCAAGTGTCCAACTG
AAAACCTGGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTA
AGTGGTCATAATCATAATCATAATCATAATCATAATCACAACTAGCCTAG
GAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAAATAAAAAACGCC
CGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCAT
TACTGGATCTATCAACAGAGTCCAGCGAGCTCGATATCAAATTACGCCCC
GCCCTGCCACTCATCGCAGTACTGTTGTATCATTAAGCATTCTGCGGACA
TGCAGGCATCCACAAACGCATGATGACTGATCGCCAGCGGCATCGCACCT
GTCGCTGCGTATAATATTGGCTATGGTGAACGGGGGCAGA
UFO04601.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:23:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15708-RA | 943 | CG15708-RA | 99..849 | 8..758 | 3755 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:23:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 16241030..16241511 | 758..277 | 2410 | 100 | Minus |
| 2R | 25286936 | 2R | 16241568..16241836 | 276..8 | 1345 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:23:54 has no hits.
UFO04601.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:34:58 Download gff for
UFO04601.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15708-RA | 99..861 | 8..767 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:27:16 Download gff for
UFO04601.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15708-RA | 99..861 | 8..767 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:15:01 Download gff for
UFO04601.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15708-RA | 99..861 | 8..767 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:15:01 Download gff for
UFO04601.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 16241018..16241511 | 277..767 | 99 | <- | Minus |
| 2R | 16241568..16241836 | 8..276 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:27:16 Download gff for
UFO04601.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12128523..12129016 | 277..767 | 99 | <- | Minus |
| arm_2R | 12129073..12129341 | 8..276 | 100 | | Minus |
