UFO04602.5prime Sequence
1149 bp (1032 high quality bases) assembled on 2009-06-30
> UFO04602.5prime
CAGTCGACATGCGAAATTCAAAGAAAGATTCGTTCAGGGAAGAAATTGGG
AGTGGGACTAGGAGGCCGCACAACTCGCTAAATGACCCCTTGAATCTGGT
TGACCGGGAACTATCTGTTCTCTTGAGGATACCGAAGCTTAAATTCAAAT
CCGTGGAGCCCCTACCCATCGCTTCCAGGGACTATGGGCTAATGAAGTCC
TCTAATAAGTCGTCGACTCCATATCCTCGCGCGCAGCAAGGAGTTGATGC
CAGTTTACTAAAGGCCCGCCTCATAATGCGTACTGGTTCTGATAATCGAA
ACAATTCACGCTCGGAAAGGCCAGAAAGACCGGAAAGGCCGGACGACGGA
AGTCCAAGTATCAGCGATGGGAGCTCTCATAGGTCGAAAACCCTGCCAAA
ATCTAAGCCTTCTGTATCCGTATTTCGTCGCCAGTCGCTGACTAGGAGTA
TCAAGGATATAGTTGCCGTTGGCACTCCGCATCCAAAAAAAGGCGTGGCC
TTGAATCCCAGGGTACTGGGCCGGCGGCTGACCGACATAAACGAAATGTT
ATGGAAAACAACCGATATGAGCGAACATTCAATGCCAAACCTGGTGAAGC
CGAAGAGGTTAAAGGGGAAAAGGAAGGTCCTACTGGCAACGCCCGCGGAA
AGTCGAGAATCGGAGTTTTTACACCGCCCCGGAGCACCGCCAGATGGAGA
CCTGGTCGGTGATGGTGTGAGCCCGCGGTTAACCCAGATCGACAGCACGT
TGTGCTCGATTAGCGAGGAATTCCAGGAGCCGCAGCTGAGTTTCGCAGAG
CGACGCAAGATTTCCCAGGAGGGGGAGTACACCATTGCGAAATACGGCCG
CAAAATGAGCGATGTGATGATGGCGGCCCCAATGCAAACCAGGAGGTTGA
CGACAAAGTGTGCGTTACGCAAAAAAAGCTAGTTAAGAAATGAAGAGGTA
TATGCGATCGCAGGCCTGGTCAAAATATCTAACGATCAGTTACATGACCA
GAAATATGGCCGGTAATATCGACGCAGATGAACGCAGCTTCTAGAACCAA
TCGTTGGCGCGCGGCCAGTAGGTGTCATAATCATAATCTATCCATATCAT
ATCCAACATACCTAGGAATCTGCATGAACTGTGCTTGGATTCTCACAAT
UFO04602.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:36:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15025-RA | 1413 | CG15025-RA | 144..1172 | 9..1033 | 4925 | 98.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:36:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 19489811..19490442 | 1033..406 | 2810 | 98.1 | Minus |
| 3R | 32079331 | 3R | 19490574..19490972 | 407..9 | 1980 | 99.7 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:36:45 has no hits.
UFO04602.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:35:00 Download gff for
UFO04602.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15025-RA | 139..1172 | 1..1033 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:38:36 Download gff for
UFO04602.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15025-RA | 139..1172 | 1..1033 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:14:53 Download gff for
UFO04602.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15025-RA | 139..1172 | 1..1033 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:14:53 Download gff for
UFO04602.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 19489811..19490440 | 408..1033 | 98 | <- | Minus |
| 3R | 19490574..19490976 | 1..407 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:38:36 Download gff for
UFO04602.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 15315533..15316162 | 408..1033 | 98 | <- | Minus |
| arm_3R | 15316296..15316698 | 1..407 | 98 | | Minus |
