UFO04604.5prime Sequence
1148 bp (1052 high quality bases) assembled on 2009-06-30
> UFO04604.5prime
CAGTCGACATGTGTGACGAAGGATCGATCAGGGAATGTGAGCCCACCACC
TTGCGGCTTCCTTTCAACAGCTACCACATCAATTTGCCGCTATATATTTT
GGACATGGTGCGCATCTTCCAGGATCATCCCAAGTACAGCAATGGTATCC
ACGAGGAGCACATTCTGGAGATGCTGGAAAAGGAACCCTTTGCCTGTGGC
GATCTGGAGTCGCAGGTGAAGACCGCTCTGCTGGACCTAACGGCCAAGGG
ATTCATACGCTTCATTACCAATGGATACCGCACCCTGGGACCCATCGCCA
AGCTATCCAATGCCCGTTCCGCGCGTCACTTCAACATGACATGGCAGCGC
ATTGCCGAGCTGCAGAAGGTCAACTGTCCGAGCCTGGAGGCGGGATCCAT
CTCCAGCGGACCCTGCATACAGCGCGGAGCCAACTACGCAAGCTTTCTAG
ACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCAT
AATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGT
GCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGA
ACAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAGT
CCAAGCGAGCTCGATATCAAATTACGCCCCGCCCTGCCACTCATCGCAGT
ACTGTTGTAATTCATTAAGCATTCTGCCGACATGGAAGCCATCACAAACG
GCATGATGAACCTGAATCGCCAGCGGCATCAGCACCTTGTCGCCTTGCGT
ATAATATTTGCCCATGGTGAAAACGGGGGCGAAGAAGTTGTCCATATTGG
CCACGTTTAAATCAAAACTGGTGAAACTCACCCAGGGATTGGCTGAGACG
AAAAACATATTCTCAATAAACCCTTTAGGGAAATAGGCCAGGTTTTCACG
TACACGCACATCTTGCGAATATATGTGTAGAACTGCGGAAATCGTCGTGT
ATTCCCCTCCAGAGCGATGAAAACGTTTCAGTTTGCTCATGGAAAACGGT
GTAACAGTGAACACTATCCCATATCACCAGCTCACCGTCGTCCATGGCAT
ACGAAGTCGGATGACCATTCATCAGCGCAGATTGGATAAGGCCGATAA
UFO04604.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:36:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3687-RA | 708 | CG3687-RA | 138..570 | 5..437 | 2075 | 98.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:35:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 16237089..16237341 | 185..437 | 1190 | 98 | Plus |
| 2R | 25286936 | 2R | 16236852..16237031 | 5..184 | 885 | 99.4 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:35:59 has no hits.
UFO04604.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:33:13 Download gff for
UFO04604.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3687-RA | 78..524 | 1..447 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:38:05 Download gff for
UFO04604.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3687-RA | 135..581 | 1..447 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:14:27 Download gff for
UFO04604.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3687-RA | 135..581 | 1..447 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:14:27 Download gff for
UFO04604.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 16236849..16237031 | 1..184 | 98 | -> | Plus |
| 2R | 16237089..16237341 | 185..437 | 98 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:38:05 Download gff for
UFO04604.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12124354..12124536 | 1..184 | 98 | -> | Plus |
| arm_2R | 12124594..12124846 | 185..437 | 98 | == | Plus |
