UFO04606.5prime Sequence
1179 bp (1063 high quality bases) assembled on 2009-06-30
> UFO04606.5prime
CAGTCGACATGTCCGGCAAACGACTTGGTAGTATGGTGTCCTCCGCCAGT
GTAATGCATTCGAGTGCATCGATCTCAAGCAGGGCTAAAAAATCGAAAAA
GCCCAAACTGCCGACCTTTGACCTGTCGCTAAGCCAGAAGGTGGACATTA
AGAAAGCCTTCGATTTGTTCGACACCCAGTGCACGGGCTTTATCGAAACC
AAGGAGCTTCGCGTGGCCATTCGTGCCCTGGGATTCGAGCCGAAGAAAGA
GGATATAAAGCGTATGATGGACGAAATCGATAAGGACAAGACGGGAAGGA
TTGCCTTTAACGATTTTCTATATCTGATGCGCCTGAAGATGGCGGAAAAG
GACTCTAATCAGGATATGATGAAGGCCTTTTCCTTCTTCGATGACGATCG
CACCGGCGGCATATCCTTCCTCAACTTGAAACGCGTGGCCAAGGAGCTGG
GCGAACAGCTCACCGACGAGGAACTGCAGGAGATGATCGACGAAGCCAAC
GTTTCCGGTGATGGTGAGGTTAGCAAGGAGGAGTTTCTCAACCTTATCAA
GAAAACCAATCTCATCGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGG
CCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCATAATCACAAC
TAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAA
AAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTG
AGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAA
TTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAGCA
TTCTGCCGACATGGAAGCCATCACAAACGGCATGATGAACCTGAATCGCC
AGCGGCATCAGCACCTTGTCGCCTTGCGTATATATTTGCCCATGGTGAAA
CGGGGGCGAAGAGTGTCCATATTGGCCACGTTTAAATCAAACTGGTGAAC
TCACCAGGATGCTGAACGAAAACATATTCTCATAACCCTTTAGGAAATAG
CAGTTCCCGTAACACGCCCATCTGCATAATGTGTAGAACTGCGAATCGTC
TGATCATCGAGCGATGAAACGTCAGTTGCCTTGAACGGGTACAGGTACCT
ACCATACCAGCACGCTCATGCACGATTCG
UFO04606.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:36:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31802-RA | 823 | CG31802-RA | 89..647 | 8..566 | 2795 | 100 | Plus |
| CG17493-RD | 5997 | CG17493-RD | 384..598 | 144..358 | 190 | 72.6 | Plus |
| CG17493-RC | 1364 | CG17493-RC | 384..598 | 144..358 | 190 | 72.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:36:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 18208591..18209149 | 566..8 | 2795 | 100 | Minus |
| 2L | 23513712 | 2L | 22550682..22550896 | 144..358 | 190 | 72.6 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:36:28 has no hits.
UFO04606.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:35:01 Download gff for
UFO04606.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31802-RA | 81..652 | 1..574 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:38:26 Download gff for
UFO04606.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31802-RA | 81..652 | 1..574 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:14:44 Download gff for
UFO04606.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31802-RA | 81..652 | 1..574 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:14:44 Download gff for
UFO04606.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 18208591..18209152 | 1..566 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:38:26 Download gff for
UFO04606.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 18208591..18209152 | 1..566 | 99 | | Minus |
