UFO04611.5prime Sequence
1028 bp (900 high quality bases) assembled on 2009-06-30
> UFO04611.5prime
CAGTCGACATGGAGGGGACTCACCGGAAGAGCGGCGCAGCAAGGATGTCG
TGCCAGAGACCGCCGCCAAGGAGGCTCACACTGGCAAGGGCAAAAAGGAG
AAGAAAGAAAAGTCGGCCGAGGGCACTAAGCCGAGGCCGGCAAGCAGCCA
GCGCGGATCGCTGACCAAGTCCCATATGGGCGTTTCCTTGCCGATGGGTG
CTCCGGCAGCCAAGCCCACCATGCGGTTCATGCCCACCTACCGCCTGGAG
TCCAAGAATCCGCTCAACAAGGAACGCGTGGAGAACATCATAAAGGCGGT
GATGAACCGACACTACAACGATGAGTACATGTTCCATCCCAAGCATTCCC
TCCACATGGCCGCGCAAGTGAGCGAGGAAATCAAGAACCGCATCAAACTC
GACAACTACGACAGATATCGCTACATAGTGCTGGTCACTGTGGGCGAGTT
CCTGATGCAGGGCCTCTACTCCATGGTCAACTTCCTGTGGGATGCTGAAA
AAGACGGATTTGTGACCTACAGCGTGGAGAGACCCTCGTACTTTGCAGTC
TGCACCACCTTTTACCTGTACTACGATGCAAGCTTTCTAGACCATTCGTT
TGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATC
ATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTC
TCACCAATAAAAAACGCCCCGGCGGCAACCGAGCGTTTCTGAACAAATCC
AGATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGA
GCTCGATATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGT
AATTCATTAAGCATTCTGCCGACATGGAAGCCATCACAAACGGCATGATG
ATCCTGGATTCGCCAGCGCATCAGCACCTTGTCGCTTGCGTATATATTTG
CCCATGTGAAACGGGGGCGAGAAGTTGTCATATGGTCACGTTAATCAACT
GGTGAACTCACCCATGAATGGCTGAACG
UFO04611.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:34:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14763-RC | 906 | CG14763-RC | 23..583 | 17..577 | 2760 | 99.5 | Plus |
| CG14763-RB | 690 | CG14763-RB | 23..583 | 17..577 | 2760 | 99.5 | Plus |
| CG14763-RA | 647 | CG14763-RA | 23..583 | 17..577 | 2760 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:34:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 7967059..7967264 | 414..209 | 1015 | 99.5 | Minus |
| 2R | 25286936 | 2R | 7966842..7967007 | 577..412 | 830 | 100 | Minus |
| 2R | 25286936 | 2R | 7967886..7968002 | 133..17 | 540 | 97.4 | Minus |
| 2R | 25286936 | 2R | 7967319..7967400 | 214..133 | 410 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:34:01 has no hits.
UFO04611.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:31:38 Download gff for
UFO04611.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14763-RA | 11..587 | 3..582 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:49:12 Download gff for
UFO04611.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14763-RA | 11..587 | 3..582 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:10:53 Download gff for
UFO04611.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14763-RA | 11..587 | 3..582 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:10:53 Download gff for
UFO04611.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 7966838..7967004 | 415..582 | 98 | <- | Minus |
| 2R | 7967059..7967258 | 215..414 | 100 | <- | Minus |
| 2R | 7967319..7967399 | 134..214 | 100 | <- | Minus |
| 2R | 7967886..7968014 | 3..133 | 93 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:49:12 Download gff for
UFO04611.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3854343..3854509 | 415..582 | 98 | <- | Minus |
| arm_2R | 3854564..3854763 | 215..414 | 100 | <- | Minus |
| arm_2R | 3854824..3854904 | 134..214 | 100 | <- | Minus |
| arm_2R | 3855391..3855519 | 3..133 | 93 | | Minus |
