UFO04612.5prime Sequence
1108 bp (1017 high quality bases) assembled on 2009-06-30
> UFO04612.5prime
CAGTCGACATGAATAAAACCTGTGCCCGTTGCCAAAAGGTGGTTTACCCC
ATCGAGGAGCTTAAGTGTCTGGACAAAACATGGCACAAAACGTGTTTCAA
ATGCACAGAATGCGGCATGACGCTCAATATGAAAACCTACAAGGGCTACA
ACAAAATGCCCTACTGCGAGGCACACATCCCGAAGGCGAAGGCAACGGCC
ATTGCCGATACGCCCGAATTGAAGCGCATCGCGGAGAACACCAAAATCCA
GTCCAACGTCAAGTACCACGCGGACTTTGAGAAGGCCAAGGGCAAATTTA
CACAGGTGGCCGATGACCCGGAAACGCTGCGTATCAAACAGAACACGAAG
CACATATCGAATGTGGCATATCACGGGGATCTGGAGAAGAAGGCGGCCAT
GGAGAAGCAGCGAGGATCCGCCGAGGTCTCCGACAGCAGCACAACATCCC
AGCAGCAACAGATGCCGCCACCACAGTCGCCGGCGAATCCGCAGCAGCAG
GCGCTCAACAGCTACAACGAGATGCGCTCGGCCATACTCCAGAACTCGCA
TCATCCCAGCGGCAATTCCGTGGATCAGTACGACCAGCCACAGCAGCAGC
AACATCAGCCGCAACAGCAGAGCACCAACCCCACGCTGGTGGCTGCCCAA
CAGCAGCAATCCCATCATAGCCTACTGAACAACAATGCCAGCAACGGCGG
CATTTCGCACAGCCACCACAGCAACATCAATAATAATGGACACGGCTCAC
AGAACCAAATGTTGCCGCCACAAATGAGACGCTCGGCGGCCAGTGTCGTC
GCCTACGATGGCAATAGCAAGCAACAAGTGGCAGCCGGCCCAGGAGCTGC
CCAAAATCACCTGCAGCAATTATACGCGTCTCCCAATTACGCCGCTGTGA
CTCCATCTGAGAATTTCAATAAACGTTAAGCAGCACGCCAGCAATGGCCA
TATGGCCGAACCAGCAGCACAGCACGTGCAGGCGGCAGCATATCGGGGAA
GAATAGCGACTACGAATCAACTGACGAATGGACAAGGGTGGTGCCGATGC
GGACGTCCAGCACCCACTTTGGTCTACACGCTCGAGCACGTTGCAATTCA
AGGGTGGC
UFO04612.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:32:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Lasp-RA | 2793 | CG3849-RA | 667..1763 | 9..1103 | 5015 | 98 | Plus |
| CG43954-RA | 3318 | CG43954-RA | 1559..2222 | 442..1103 | 2850 | 96.7 | Plus |
| Lasp-RC | 3189 | CG3849-RC | 1496..2159 | 442..1103 | 2850 | 96.7 | Plus |
| CG43954-RA | 3318 | CG43954-RA | 667..1099 | 9..441 | 2165 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:32:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 16678925..16679473 | 990..442 | 2555 | 99.3 | Minus |
| 3L | 28110227 | 3L | 16680812..16680951 | 441..302 | 700 | 100 | Minus |
| 3L | 28110227 | 3L | 16681236..16681370 | 307..173 | 675 | 100 | Minus |
| 3L | 28110227 | 3L | 16694202..16694296 | 172..78 | 475 | 100 | Minus |
| 3L | 28110227 | 3L | 16710943..16711011 | 77..9 | 345 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 23:32:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6718..6919 | 553..758 | 229 | 61.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6763..6921 | 572..729 | 213 | 65.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2306..2450 | 587..736 | 206 | 63.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6726..6916 | 583..773 | 206 | 61.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6724..7003 | 464..736 | 203 | 57.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6734..6940 | 492..703 | 191 | 59.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2361..2542 | 540..732 | 185 | 59.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6718..6861 | 590..735 | 184 | 61.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6723..6953 | 487..731 | 183 | 58.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2326..2540 | 574..773 | 175 | 58.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2787..3005 | 585..791 | 172 | 60.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2844..2989 | 591..732 | 170 | 62.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2436..2644 | 431..633 | 164 | 59.2 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1093..1151 | 572..629 | 157 | 76.3 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1057..1143 | 581..667 | 155 | 67 | Plus |
| gypsy11 | 4428 | gypsy11 GYPSY11 4428bp | 970..1007 | 583..620 | 136 | 84.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1540..1600 | 574..634 | 134 | 68.9 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1110..1152 | 577..619 | 134 | 79.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2478..2662 | 434..619 | 133 | 58.1 | Plus |
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3286..3437 | 583..736 | 131 | 61.4 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1117..1167 | 572..622 | 120 | 70.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6532..6564 | 587..619 | 111 | 81.8 | Plus |
UFO04612.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:34:57 Download gff for
UFO04612.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Lasp-RA | 635..1738 | 1..1103 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:05:49 Download gff for
UFO04612.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Lasp-RA | 660..1763 | 1..1103 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:05:27 Download gff for
UFO04612.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Lasp-RA | 660..1763 | 1..1103 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:05:27 Download gff for
UFO04612.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 16678806..16679473 | 442..1108 | 96 | <- | Minus |
| 3L | 16680812..16680947 | 306..441 | 100 | <- | Minus |
| 3L | 16681238..16681370 | 173..305 | 100 | <- | Minus |
| 3L | 16694202..16694296 | 78..172 | 100 | <- | Minus |
| 3L | 16710943..16711018 | 1..77 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:05:49 Download gff for
UFO04612.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 16687302..16687396 | 78..172 | 100 | <- | Minus |
| arm_3L | 16704043..16704118 | 1..77 | 94 | | Minus |
| arm_3L | 16673912..16674047 | 306..441 | 100 | <- | Minus |
| arm_3L | 16674338..16674470 | 173..305 | 100 | <- | Minus |
| arm_3L | 16671906..16672573 | 442..1108 | 96 | <- | Minus |
