UFO04615.5prime Sequence
1101 bp (1012 high quality bases) assembled on 2009-06-30
> UFO04615.5prime
CAGTCGACATGGTGGAGCAACAAAAAAAGCGCTTGGAGGGCGCCATTAGC
GAAATGATCGAGGACATGTACCGCACCCACTTGCGCAGAATGCAGTCCAC
GATGCACCGCTGTGCCGCCCGCTGCTGCGACGATGATCGAGGGACGCTGG
AGAGCGTACAGAACTGCATCGAGAAGTGCGCCGGTCCCCTGATGGATGCC
CAGGATTTCCTGCAGCACGAGCTGGGCCAATTCCAGAATAGACTTCAAAA
CTGCGTTAGGGATTGCAACAGCGATGCGCGGTCTCAGATGCCCAGCAATC
CGAGTGACCGGGACATGTCCCGATCCCAGCACATGTTTGAGAGTTGCACG
AACAACTGTGTGGACAAGTACATAAACCTGATACCTGGTCTGCTCAAGTC
GATCAAACAAACATTGGACAGGGGTCCGCCGAAAAGATCACGCAACATGG
ATGTCGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGT
GGTCATAATCATAATCATAATCATAATCATAATCACAACTAGCCTAGGAG
ATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGC
GGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTACT
GGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAATTACGCCCCGC
CCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCCGACA
TGGAAGCCATCACAAACGGCATGATGAACCTGAATCGCCAGCGGCATCAG
CACCTTGTCGCCTTGCGTATAATATTTGCCCATGGTGAAAACGGGGGCGA
AGAAGTTGTCCATATTGGCCACGTTTAAATCAAAACTGGTGAAACTCACC
CAGGGATTGGCTGAGACGAAAAACATATCTCAATAAACCCTTTAGGAAAT
AGCCAGTTTTCACCGTAACACGCCACATCTTGCGAATATATGTGTAGAAC
TGCCGAAATCGTCGGGTATTCACTCGAGCGATGAAACGTTTCAGTGCTCA
TGGAACCGGTTAACAAGGGTGAACACTATCAATAACAGTTACGGCTCATG
G
UFO04615.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:34:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5327-RA | 2136 | CG5327-RA | 64..510 | 9..455 | 2205 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:34:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 18616440..18616635 | 260..455 | 950 | 99 | Plus |
| 2R | 25286936 | 2R | 18616195..18616362 | 94..261 | 840 | 100 | Plus |
| 2R | 25286936 | 2R | 18616051..18616137 | 9..95 | 435 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:34:20 has no hits.
UFO04615.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:31:39 Download gff for
UFO04615.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5327-RA | 56..513 | 1..459 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:49:17 Download gff for
UFO04615.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5327-RA | 56..513 | 1..459 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:11:02 Download gff for
UFO04615.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5327-RA | 56..513 | 1..459 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:11:02 Download gff for
UFO04615.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 18616043..18616137 | 1..95 | 95 | -> | Plus |
| 2R | 18616197..18616361 | 96..260 | 100 | -> | Plus |
| 2R | 18616441..18616635 | 261..455 | 98 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:49:17 Download gff for
UFO04615.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 14503548..14503642 | 1..95 | 95 | -> | Plus |
| arm_2R | 14503702..14503866 | 96..260 | 100 | -> | Plus |
| arm_2R | 14503946..14504140 | 261..455 | 98 | == | Plus |
