UFO04617.5prime Sequence
1135 bp (1037 high quality bases) assembled on 2009-06-30
> UFO04617.5prime
CAGTCGACATGAGCCCTCTCCCACGAGTCAACATCGACGAGCCGAAATAT
GATCAGAACTCCTACTTGGGCAGAGCCAAGCACTTCTTCCTGCTGACCAA
CCCGCTTAATGTGCTGGCCTCCGCCTCGAAGTTGGAGGAGGCCCGCCAGA
TTGTGATAAAGTACCGGGCTGGCAAGGATGTTCCCGAGTGCAAGACCATC
GACGACGTGTGGCGCGCTAAGTACCTGTACGATTCGGCGTTCCATCCAGA
GACCGGGGAGAAGCAGATAGTCATCGGGCGCATGGCTGCGCAGATGCCCA
TGAACACAATCATCACCGGCGGCATGATGGCCTTCTACAAAAGCACTCCC
GCCGTCGTCTTCTGGCAGTGGTTCAATCAGACATTCAACGCCATTGTTAA
CTACACGAACCGTTCGGGAACCTCGCCCATCAGCCAGCAGCAACTAGTTA
CCTCGTACTGTTTGGCCACTAGCGGAGCCCTGGTCACGGCCCTTTCCCTG
AACCACGCAGTGAAGAACATGAATCCGCTCTTGGGTCGCCTTGTCCCCCT
AGTGGCAGTTGGAGCTGCCAACTGCATCAACATCCCCTGCATGCGAATGC
AAGAGCTGCGCAACGGAGTGACGCTTTTCGATGAACACAGCAACGAAATG
GGCATCTCAAAGAAGGCGGCCGTTGTTGGGATCTCAACCGTAATCCTAAG
TCGAATCGCCATGGCCATACCGGGAATGACACTGACACCGGTGTTGATGA
ATGTCCTCGAAAAGAGGGGATTCCTGGCTAAATACCCGCGATCCAACGCT
CCCATCCAAACGCTCTTCTGCGGCTTCGTGCTGATTTTCGCCACGCCCCT
TGGCTGCGCCTTCTTCAAGCAGCGAGCGGACATCAAAGTGGATAGCCTGC
AGTCGGAGTCCGCGACAGCATTAGAGAGCGTCCGGAATTGGAAACTGTCT
GGTCACAAGGACTGGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGCCC
AGGTAAGTGTCATAATCATATCATATCATATCATATCACACCTAGCCTAG
GAGATCTGTCATGACTATGCTGATTCTCAACAATAAACGCGCGCACGACG
TTCTGAAAAATCGATGGATCTGAGTCATACTGGAT
UFO04617.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:16:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11739-RB | 1378 | CG11739-RB | 149..1098 | 8..953 | 4645 | 99.5 | Plus |
| CG11739-RD | 1320 | CG11739-RD | 91..1040 | 8..953 | 4645 | 99.5 | Plus |
| CG11739-RA | 1645 | CG11739-RA | 416..1365 | 8..953 | 4645 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:16:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 4380703..4380930 | 730..953 | 965 | 96.9 | Plus |
| 3R | 32079331 | 3R | 4379455..4379623 | 8..176 | 830 | 99.4 | Plus |
| 3R | 32079331 | 3R | 4380109..4380270 | 440..601 | 810 | 100 | Plus |
| 3R | 32079331 | 3R | 4379674..4379825 | 171..322 | 760 | 100 | Plus |
| 3R | 32079331 | 3R | 4380504..4380631 | 602..729 | 640 | 100 | Plus |
| 3R | 32079331 | 3R | 4379927..4380046 | 321..440 | 600 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:16:53 has no hits.
UFO04617.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:33:15 Download gff for
UFO04617.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11739-RD | 87..1057 | 1..964 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:02:21 Download gff for
UFO04617.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11739-RA | 409..1379 | 1..964 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:47:41 Download gff for
UFO04617.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11739-RA | 409..1379 | 1..964 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:47:41 Download gff for
UFO04617.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 4380504..4380631 | 602..729 | 100 | -> | Plus |
| 3R | 4379447..4379618 | 1..171 | 98 | -> | Plus |
| 3R | 4379675..4379824 | 172..321 | 100 | -> | Plus |
| 3R | 4379928..4380045 | 322..439 | 100 | -> | Plus |
| 3R | 4380109..4380270 | 440..601 | 100 | -> | Plus |
| 3R | 4380703..4380948 | 730..970 | 95 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:02:21 Download gff for
UFO04617.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 206226..206353 | 602..729 | 100 | -> | Plus |
| arm_3R | 205831..205992 | 440..601 | 100 | -> | Plus |
| arm_3R | 205169..205340 | 1..171 | 98 | -> | Plus |
| arm_3R | 205397..205546 | 172..321 | 100 | -> | Plus |
| arm_3R | 205650..205767 | 322..439 | 100 | -> | Plus |
| arm_3R | 206425..206670 | 730..970 | 95 | -> | Plus |
