UFO04625.5prime Sequence
1113 bp (1016 high quality bases) assembled on 2009-06-30
> UFO04625.5prime
CAGTCGACATGGCCAGAGGAGCTGCCGCCTTCATCTATATGGTTTTCATA
CCCGTTGCAGGCATTGCGAGCTCTAAAGAGATCAGTGTGTCGTACTACAC
TGATCTCATATTTTTCGTTTATTCCGCTATATTCATGGGCATCATGATGG
ACAGTTCGAAATTGAGTGACCGCTTGGCTTTTATTGTCATCTCCTTGGTC
GGTGGAAGTTTGAAATTTCTTCAGATTTTCTTGACCATCGCCGCGGCCAT
TGTGTCCATTTTGGTGAATCCCACAATATCCGCTGCTTTTTGGATGAAGG
TGTCCCAAGCCGTGATGGTGGAATACGATAATGGTGGTTTGATAAAATTA
AACTCTGAAGAGAAGCCCTATGAAATTGGATCCAAACCATATCCCACGCG
TCCTGTAATCGGAATATACCTAACCTGTTGCTACGCAGCCTCTTTGGCAG
CAAGTCTTTCGCCCATCGTCAATCCCAATGGTGTGATAAGCGATGGTTTT
GGGGGGTCTCTTACAGTTCTGGAAATTGGCATGCTAATGGCGGGACCAGC
TCTAATGGGTCTCGTTGTCATGATCTTCTGGTTGCAAGTCCTCTTCCTCG
GTCTCCTTGGAGGCAGTGTGAAGCGCGATCTGGCGGAAATGGCTGGGGCT
AAGGCGGGCTTTAAACAGACCGCGTCTGAAAGAAAACAGGCTCTTGGTCC
CTGGGGAATATATCCCATCTTGGCCTTGAGCTTGATTCTATTGATGTTCC
TGCTGGTGGCCACTCGCAAGCCGCGCATCTTTACGGGCTGGGATAGTATA
AACTATAACGCGGAATCTGGTCTCTCAGTGGCCCGGCATTGGCATGTCCA
TTCTCTTCTTCGCAATTCCGGCCAACTATATATTCTGCAGATACTATGTT
TGCCGCCAGCCGGAGAAAGAGGGTCCTGCCATTCACTTCTGGGCTGGAAG
CGTCAACACATACTCCCTGGGGCGGAAATCTTTATGCTGGGCGCGCTTCA
GCTTTAGCTAATAGTTCCGCTGTTTGTGGATGACACCTACTGCGATCGAT
GACTCCGATAACAGATCATATGAAAGCTTCATTCTGCGGCTTCATGGAAA
CTTGACACGCTGT
UFO04625.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:40:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7309-RC | 2093 | CG7309-RC | 289..1386 | 9..1090 | 4910 | 97.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:40:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 10907233..10907763 | 1031..505 | 2200 | 97.2 | Minus |
| 2L | 23513712 | 2L | 10908282..10908490 | 217..9 | 1045 | 100 | Minus |
| 2L | 23513712 | 2L | 10907826..10907950 | 507..383 | 625 | 100 | Minus |
| 2L | 23513712 | 2L | 10908114..10908229 | 333..218 | 580 | 100 | Minus |
| 2L | 23513712 | 2L | 10908013..10908062 | 382..333 | 250 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 20:40:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ZAM | 8435 | ZAM DMZAM 8435bp Derived from AJ000387 (e1237231) ((Rel. 54, Last updated, Version 1). | 7412..7471 | 310..251 | 110 | 68.9 | Minus |
UFO04625.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:35:03 Download gff for
UFO04625.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7309-RB | 206..1271 | 9..1063 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:51:15 Download gff for
UFO04625.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7309-RC | 289..1354 | 9..1063 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:14:10 Download gff for
UFO04625.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7309-RC | 289..1354 | 9..1063 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:14:10 Download gff for
UFO04625.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 10907194..10907762 | 506..1063 | 96 | <- | Minus |
| 2L | 10907828..10907950 | 383..505 | 100 | <- | Minus |
| 2L | 10908013..10908062 | 333..382 | 100 | <- | Minus |
| 2L | 10908115..10908229 | 218..332 | 100 | <- | Minus |
| 2L | 10908282..10908490 | 9..217 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:51:15 Download gff for
UFO04625.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 10907194..10907762 | 506..1063 | 96 | <- | Minus |
| arm_2L | 10907828..10907950 | 383..505 | 100 | <- | Minus |
| arm_2L | 10908013..10908062 | 333..382 | 100 | <- | Minus |
| arm_2L | 10908115..10908229 | 218..332 | 100 | <- | Minus |
| arm_2L | 10908282..10908490 | 9..217 | 100 | | Minus |
