UFO04627.5prime Sequence
1115 bp (1030 high quality bases) assembled on 2009-06-30
> UFO04627.5prime
CAGTCGACATGACGGACAATGATAAGAAGACCGAAGAAGAAATCAGGCGG
GAGATCGCACGGGAATTTGATTTGCCTGAGCGCAAGTCCAAGATAGCCAC
CATTCTTAAGCAGAAAGACCGTGAGTACTGCATATGCCGCTCCTCCGACT
GCTCCAGGTTCATGATAGGCTGCGATGGTTGCGAGGAGTGGTACCACGGC
GACTGTATAGAGATCACCGAGAAGGACGCTGAGCACATCAAAAATTACTA
CTGCCGGCGCTGCAAAAAAGAGAATCCCGAACTGCAGACTATATTCCGCC
TGGTGGCCACCGAACGTGCAGCCGCATCGAACGCCGCCTCTACAAGTCTC
AATGCCCCGGGCGTAGGTCCATCGGGAGCTGCGCCTGCTGCTGCACCGGT
GGCGCCCGCAACAACCAGCCAGCAAGCGCCGCCACCGACCACTGCGGCAG
CGAAGCGCAAAAACAGCAGCGCCCAAGAACCAAAGGAGTCGCAGCCGACT
CAAGCAGGTACGAAGCGGGATAAGGCGGCACCCAAGACTTCCAATGTCCA
GGTGAGCCCGCGGGCGGTCAGTCCGGAGATATTCCTCAATCCGGAGCTAC
AGGGCATCCAGCAGTGCCACGGACCCAATTGCTGCTCCCATGCGAGGCCG
CAGAGCAAGTACTGCAGCGATGAGTGTGGCTCTAATCTAGCCATCGAACG
CCTATTTCAGATTCTGCCGCAACAAATGCAAGAGTGGAATATTACGCCTA
GCCGCGCCGCCGAGGAAACACGCAAGCATCTAGAGCTCAACATGGACGAG
CTGGTGCTCAAACAGCACGAGCAACTGGAGGAGTTCGAGAAGCAGAGGCA
ACAGATACAGACTCAGCAGAACAGTACCAAGAGAAGCAAAGCTAATGTTG
CAGCAACAACCGCAGCAGCAGCACACAGCAGGAGTTACACACAGCAGGAG
TGCACAACAGCAGAGCAGAGCAACAACAGTGCTGCAGCACTGCACTGAGC
CACATCATGTTCAGCACTGCACTGCAATGCAGCTGTGCAGCAGCAGCGAC
GGCTGTTGCAGCACAACAGCATAACGAATCAGCAGCTTCTGAACATCGTG
GGCGCGCACCAGTAT
UFO04627.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:36:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17440-RA | 1300 | CG17440-RA | 128..1216 | 5..1074 | 4925 | 98 | Plus |
| Cfp1-RB | 2344 | CG17446-RB | 91..554 | 22..485 | 2020 | 95.7 | Plus |
| Cfp1-RA | 2404 | CG17446-RA | 163..614 | 34..485 | 1975 | 95.8 | Plus |
| Cfp1-RB | 2344 | CG17446-RB | 689..994 | 482..781 | 965 | 87.9 | Plus |
| Cfp1-RB | 2344 | CG17446-RB | 1635..1823 | 792..963 | 255 | 77.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:36:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 9268971..9269514 | 710..167 | 2720 | 100 | Minus |
| X | 23542271 | X | 9272285..9272603 | 485..167 | 1400 | 95.9 | Minus |
| X | 23542271 | X | 9268522..9268908 | 1074..707 | 1020 | 93.3 | Minus |
| X | 23542271 | X | 9271933..9272118 | 693..508 | 690 | 91.4 | Minus |
| X | 23542271 | X | 9269577..9269710 | 166..33 | 670 | 100 | Minus |
| X | 23542271 | X | 9272666..9272798 | 166..34 | 575 | 95.5 | Minus |
| X | 23542271 | X | 9271784..9271858 | 781..707 | 285 | 92 | Minus |
| X | 23542271 | X | 9271086..9271143 | 849..792 | 215 | 91.4 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:36:06 has no hits.
UFO04627.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:33:18 Download gff for
UFO04627.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17440-RA | 110..1203 | 1..1074 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:38:10 Download gff for
UFO04627.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17440-RA | 123..1216 | 1..1074 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:14:31 Download gff for
UFO04627.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17440-RA | 123..1216 | 1..1074 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:14:31 Download gff for
UFO04627.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 9268522..9268904 | 711..1074 | 94 | <- | Minus |
| X | 9268971..9269514 | 167..710 | 100 | <- | Minus |
| X | 9269577..9269710 | 33..166 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:38:10 Download gff for
UFO04627.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 9162555..9162937 | 711..1074 | 94 | <- | Minus |
| arm_X | 9163004..9163547 | 167..710 | 100 | <- | Minus |
| arm_X | 9163610..9163743 | 33..166 | 100 | <- | Minus |
