UFO04629.5prime Sequence
1096 bp (990 high quality bases) assembled on 2009-06-30
> UFO04629.5prime
CAGTCGACATGGCGACACGTGTGGTGGCAACGGCGACAGTGCGGGCGGTG
AAAGGCCGGAAGTTAATCCCGACGCGGGCCGCTCTGACTCTGACACCCGC
GGCGGTGCTACGCATCAAGACGCTTCTGCAGGACAAGCCGGACATGGTTG
GCCTAAAGGTGGGCGTACGGCAGCGAGGATGCAATGGTCTGTCCTACACG
CTGGACTATGCCAGCCAAAAAGACAAGTTGGATGAGGAGGTGGTCCAGGA
TGGCGTCAAGGTCTTCATCGACAAGAAAGCGCAGTTGTCGCTGCTGGGTA
CCGAGATGGACTTTGTGGAATCGAAGCTGTCCAGCGAGTTCGTGTTTAAC
AATCCGAACATTAAGGGCACATGCGGCTGCGGCGAATCGTTCAGCATGGC
AAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATA
ATCATAATCATAATCATAATCATAATCACAACTAGCCTAGGAGATCCTGG
TCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACC
GAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTA
TCAACAGGAGTCCAAGCGAGCTCGATATCAAATTACGCCCCGCCCTGCCA
CTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCCGACATGGAAGC
CATCACAAACGGCATGATGAACCTGAATCGCCAGCGGCATCAGCACCTTG
TCGCCTTGCGTATAATATTTGCCCATGGTGAAAACGGGGGCGAAGAAGTT
GTCCATATTGGCCACGTTTAAATCAAACTGGTGAAACTCACCCAGGGATT
GGCTGAGACGAAAACATATTCTCATAAACCCTTTAAGGAAATAGGCCAGG
TTTCACGTAACACGCCACATCTTGCGAATATATGTGTAGAAACTGCGAAA
TCGTCGTGTATCACTCCAGACGATGAAACGTTTCAGTTTGCTCCATGGAA
ACGGGTAACAAGGTGAACCTATCCATATCACAGCTCACAGTCTTTCATGC
ATCGAAATCGGATGAGCATCTCAGCGGCGAATGTATAGCGGATAAC
UFO04629.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:35:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| l(1)G0136-RA | 780 | CG8198-RA | 100..489 | 9..398 | 1950 | 100 | Plus |
| l(1)G0136-RB | 783 | CG8198-RB | 100..492 | 9..398 | 1910 | 99.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:35:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 15735388..15735489 | 297..398 | 510 | 100 | Plus |
| X | 23542271 | X | 15734369..15734452 | 9..92 | 420 | 100 | Plus |
| X | 23542271 | X | 15735245..15735324 | 221..300 | 400 | 100 | Plus |
| X | 23542271 | X | 15735098..15735174 | 146..222 | 385 | 100 | Plus |
| X | 23542271 | X | 15734552..15734608 | 92..148 | 285 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:35:18 has no hits.
UFO04629.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:31:42 Download gff for
UFO04629.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(1)G0136-RA | 88..482 | 5..402 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:37:37 Download gff for
UFO04629.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(1)G0136-RA | 98..492 | 5..402 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:14:07 Download gff for
UFO04629.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(1)G0136-RA | 98..492 | 5..402 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:14:07 Download gff for
UFO04629.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 15734367..15734452 | 5..92 | 97 | -> | Plus |
| X | 15734553..15734606 | 93..146 | 100 | -> | Plus |
| X | 15735099..15735174 | 147..222 | 100 | -> | Plus |
| X | 15735247..15735321 | 223..297 | 100 | -> | Plus |
| X | 15735389..15735489 | 298..398 | 100 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:37:37 Download gff for
UFO04629.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 15628400..15628485 | 5..92 | 97 | -> | Plus |
| arm_X | 15628586..15628639 | 93..146 | 100 | -> | Plus |
| arm_X | 15629132..15629207 | 147..222 | 100 | -> | Plus |
| arm_X | 15629280..15629354 | 223..297 | 100 | -> | Plus |
| arm_X | 15629422..15629522 | 298..398 | 100 | == | Plus |
