UFO04634.5prime Sequence
1128 bp (1011 high quality bases) assembled on 2009-06-30
> UFO04634.5prime
CAGTCGACATGGCCATTAAGTCTCTGATTTTGCTTACTTCCCTGCTGGGA
ATAAGCCTTGCAGCGGACTATTGTGCTCTGCCCACGTGCCTGGACAAGCA
CATAGCCTGCAACAACAAGGGAAATTTCAGTGAAAATTGTCCCAAGGACG
TGCGTGAGGTGAAGATCGAGCCGCACCACAAACTCATACTCAATCTCTTC
AACGAGCTGCGCAACAATGTGGCTGGAGGCAAAATAGAAGGACTACCCAA
GGCTGTTCGCATGGCCAAGATGTCCTGGTGCGAGGAGCTCTCCCATCTGG
CCTTGCTGAACGTAAAGACCTGTGAGTCCCTGCCAGATAAATGTCGCAGC
ACCGAGAGATTCGCCTACGCCGGCCAGAACAACGCCGTGTTCCAGTACAG
CGGAGCCGAGACGGAGTACACCGATGCGGAAATAATAAAGGAGCAGATCG
AGAACTGGTTTGCTGAGCGCTCGAATGCATCTCCCGAGATCCTCGCCAGC
TTCCCGGAGGAGCTTCCCAACAAAGCGGTGACCAAGTTCACCATCGCGGT
GGCCGAGAAGAACACCCATGTGGGATGTGCCGCGGTGCGCTTCTCCCGGG
ACTTTTACAACCACTTCGTACTCACCTGCAACTTCGCCACATCGAACATT
GTGGGTCAGCCTGTCTACACTCCGGGAGAGAAGGCAACCACCGGGTGCAA
GAACCGTTATGGAGCTGCCTACGACTACCCCAACCTGTGCTACGCCAAGG
AGATCTACGACAACGAGAAGGTCATCGAGAACACACAGACGATGGCAAGC
TTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCA
TAATCATAATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCAT
GACTAGTTGCTTGATTCTCCCCAATAAAAAACGCCCGCGCCACCGAGCGT
TCTGAACAAATCCAGAATGGAGTTCTTGAGTCATTACTGGATCTATTCAA
CAGGAGTCCAAGCGAGCTCGTTTATCAATTTACGCCCCGGCCCTGCCACT
CATCGCAGGTCCTGGTTGTTAATCTATTAAGCATTCTGCCGACATGAGAG
CCATCAAACGCATGATATAACCTTGAAT
UFO04634.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:55:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| scpr-C-RB | 1109 | CG5106-RB | 17..802 | 9..794 | 3870 | 99.5 | Plus |
| scpr-C-RA | 910 | CG5106-RA | 17..802 | 9..794 | 3870 | 99.5 | Plus |
| scpr-B-RA | 898 | CG17210-RA | 13..798 | 9..794 | 3750 | 98.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:55:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 11225703..11226374 | 123..794 | 3300 | 99.4 | Plus |
| 3R | 32079331 | 3R | 11240141..11240812 | 794..123 | 3195 | 98.4 | Minus |
| 3R | 32079331 | 3R | 11241384..11242052 | 126..794 | 3165 | 98.2 | Plus |
| 3R | 32079331 | 3R | 11225536..11225649 | 9..122 | 570 | 100 | Plus |
| 3R | 32079331 | 3R | 11240866..11240979 | 122..9 | 555 | 99.1 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:55:40 has no hits.
UFO04634.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:35:03 Download gff for
UFO04634.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| scpr-C-RA | 17..807 | 9..800 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:46:26 Download gff for
UFO04634.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| scpr-C-RA | 17..807 | 9..800 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:34:38 Download gff for
UFO04634.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| scpr-C-RA | 17..807 | 9..800 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:34:38 Download gff for
UFO04634.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 11225536..11225649 | 9..122 | 100 | -> | Plus |
| 3R | 11225703..11226381 | 123..798 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:46:26 Download gff for
UFO04634.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 7051258..7051371 | 9..122 | 100 | -> | Plus |
| arm_3R | 7051425..7052103 | 123..798 | 98 | -> | Plus |
