UFO04639.5prime Sequence
1186 bp (1054 high quality bases) assembled on 2009-06-30
> UFO04639.5prime
CAGTCGACATGAAAAGAGTCCATGTCGATAACTACGCTCCAAAGTACTAC
AGCGGCAAGTGGTCATGGGACTCGGAGAAGGACTGCCTCAACTTTCAGGC
GCACAACGATCTGGAAAACGCAAGAGAGCGCTATATAATCACCAATGGGT
ACAAGTTCCTGCGTACCATCGACCAAGAGGAGGAGCTTATCTTCCGGCAG
GAGTATGTACGCGCCAAGTCCAACACCAGTGACACAGTGGTGCTAAGAGA
TATTCGAGATCTGGTGCTCTACTTGATGCCTAAAGACTTTCTAACCTACA
AGTTCATTGAATTCATGCATGAGCCACAGGTGCAGTCCGTGCTCCACGCC
TTAACATTGTACTTTGAGTACTACCTACGCCTGGTGGAGTTCGTCCTGAT
TCGCAGAGATGAACTCTCTGGCCAGATGGCCCAAATTCAGAGCGAGCAGA
CCACTGAGATGAAGAAAACCTATTCCGTTTACCTGAGCCACTTCCGCATG
CTATTAGCCCGAAACTACTGTGAGATTATCAAGGGCGAGGGATCTATGGC
CAAGTACTACCACATGAAGCCGATTTCCAACATTTCAGCAACTATCCACG
ATAAGTACTTCCATGAGCATTTTCTGGCAGTATCCATCCAAATAGTCTGG
ATATGCATGCATCGCCGAGCGTATTTCGTCATCGAAATGGAGATGAATCG
GCTTTTCCGGTCGGAGCACTTTGTTTCCGTCCGCCCTGAGTACCTTGAGT
TCACGGAGGCGGAGCGAAGTCTTCTTTACGGCCGAAACAACAAGAACCTC
AATTATCGCGTCCAGATCTCTCCGCTGGTCCAAGAGTTGGAGCATGTTGT
GACGGAGGATTTGCCCATTCTGTGGATAGGAAAGCGTAAGTATAGGGGCA
CTGATCCTCACATCGCTCAGATCGAGTTGGAGTACGTTGTGCCCGGGATC
GCAGCTCGCTTGATGATCTGTCCCATGGATCGTGGCCACCCGAGATCTCT
ACAACACCCTTCTGAACTCGACTGGCCAGCAGTTCGTTCTCAAACTTTCG
GAGCAATACGACCAATATCATATTCATCGACGAACACTGACATTTCCCAA
GTGGGTGACTGAATGCCAAATTTGGGAAAGTTCATACTTACAGATCTTTA
CTTTCAGCCAGTTACCCATTCCAATTCCTGGCAAGT
UFO04639.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:34:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31391-RA | 1704 | CG31391-RA | 87..1198 | 9..1108 | 5105 | 98.2 | Plus |
| CG31467-RA | 1694 | CG31467-RA | 142..1181 | 21..1052 | 1940 | 80 | Plus |
| CG14689-RA | 1661 | CG14689-RA | 109..1150 | 8..1048 | 805 | 73.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:34:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 10703917..10704989 | 1073..9 | 4880 | 98.7 | Minus |
| 3R | 32079331 | 3R | 10705797..10706722 | 946..21 | 1825 | 79.8 | Minus |
| 3R | 32079331 | 3R | 10710947..10711140 | 201..8 | 475 | 83 | Minus |
| 3R | 32079331 | 3R | 10710211..10710716 | 943..438 | 430 | 72.3 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:34:46 has no hits.
UFO04639.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:31:46 Download gff for
UFO04639.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31391-RA | 79..1175 | 1..1091 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:49:24 Download gff for
UFO04639.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31391-RA | 79..1175 | 1..1091 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:11:13 Download gff for
UFO04639.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31391-RA | 79..1175 | 1..1091 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:11:13 Download gff for
UFO04639.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 10703917..10704997 | 1..1073 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:49:24 Download gff for
UFO04639.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 6529639..6530719 | 1..1073 | 98 | | Minus |
