Clone UFO04641 Report

Search the DGRC for UFO04641

Clone and Library Details

Library:UFO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2008-06-20
Comments:BD Creator expression clones with C-terminus FLAG HA tag for transgenic expression using PhiC31 integrase system
Original Plate Number:46
Well:41
Vector:pUAST-CFLAGHA-BD-PHI
Associated Gene/TranscriptRpL27-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

UFO04641.5prime Sequence

737 bp (638 high quality bases) assembled on 2009-06-30

> UFO04641.5prime
CAGTCGACATGAGGAAAATCATGAAGCAGGGCAAGATCGTAATCGTCCTT
AGCGGACGTTACGCCGGTCGCAAGGCCATCATCGTCAAGACCCACGACGA
TGGAACCCCGGAGAAGCCCTTCGGACACGCCCTCGTCGCCGGTATCGATC
GCTACCCGCGCAAGGTGACCAAGAAGATGGGCAAGAACAAGCTGAAGAAG
AAGTCCAAGGTCAAGCCCTTCCTGAAGAGCCTGAACTACAATCATCTGAT
GCCCACCCGCTACACGGCGCACGACATCAGCTTTGAGAAGCTGTCGCCCA
AGGACCTGAAGGATCCCGTAAAGCGCAAGACGCACCGCTTCCAGACCCGC
GTCAAGTTCGAGTCCGTCTACAAGGAGGGCAAGAACAAGTGGTTCTTCCA
GAAGCTGCGTTTCGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCC
AGGTAAGTGGTCATAATCATAATCATAATCATAATCATAATCACAACTAG
CCTAGAGATCCTGGTCATGACTAGTGCTTGTATTCTCACCAATAAAAAAC
GCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGAGTTCTGAGTCA
TTACTGATTTATCACAGAGTCCAAGCGAGCTCGATTATCAAATTACGCCC
CGCCCTGCCCCTCATCGCAGTACTTGTTGTAATCATTAGCATTCTGCGAC
TGAGCCATCCCGACCGCATGATGACTGATCGCCAGCG

UFO04641.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:28:31
Subject Length Description Subject Range Query Range Score Percent Strand
RpL27-RD 987 CG4759-RD 108..512 9..413 2025 100 Plus
RpL27-RC 544 CG4759-RC 49..453 9..413 2025 100 Plus
RpL27-RB 603 CG4759-RB 108..512 9..413 2025 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:28:29
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 25684098..25684502 413..9 2025 100 Minus
Blast to na_te.dros performed on 2014-11-28 23:28:30 has no hits.

UFO04641.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:31:47 Download gff for UFO04641.5prime
Subject Subject Range Query Range Percent Splice Strand
RpL27-RA 74..492 1..420 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:02:59 Download gff for UFO04641.5prime
Subject Subject Range Query Range Percent Splice Strand
RpL27-RB 100..518 1..420 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:03:00 Download gff for UFO04641.5prime
Subject Subject Range Query Range Percent Splice Strand
RpL27-RB 100..518 1..420 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:03:00 Download gff for UFO04641.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 25684092..25684509 1..420 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:02:59 Download gff for UFO04641.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 21509814..21510231 1..420 98   Minus