UFO04642.5prime Sequence
1140 bp (1037 high quality bases) assembled on 2009-06-30
> UFO04642.5prime
CAGTCGACATGAACAAAAAACCAGAATACAAGCTAAGCGAGCGCGACTTA
GACATCCGCTCTGATCTGGAGTTCGTAGATGGTATGCTGAAGGACCTGCA
ATTGGAGGTGGAGCCGCAGGCTCGTGGGGTCATCTTGGATCTGGCTTATA
CTTTGGCAAGGGACAAACTCGTCGAGGCTCAACGTTTCGCAAAGTTGGTC
AATCGCACCAAAGTGAGTATCGAGGACTTGAAGATGGCCAACCTGGAGCG
GACAGAGGAGCTGAGCAAGAGAGCGATCCATACGCCGGTGAAGTCCCTTA
TTCCCAGCCAGGCATCTCTGCCCTCGCCGACTGTGAGCCGTGGACTGATG
CTGCCCACCTGGCGGCAGTGTCAGATGGGTACAATGGCCGAATTGAAGGA
CAAGGTCCCTGAGACTCAGCCACCGAATCCCAAGCCCGTGCCGCCCCTAA
CACCGGTAACAGCTTCTACTCCTGGTCTAAACTCTGGCTCCAATTCGATG
CTGACTACTGGATCTTCAAGCCCGGGTCTTAAGGCTTCACACTCCCTTGC
TCCTCCCATTGGCACCAAGGCGAATCTTTTCGACAATTTTACCTTGCCAA
CGATTTTACCCGATAGAGTTCGCAAGGATGCTCGTGGTAGCGCAATAAGA
AGTCATTCTACTCCTAGGATGTACATCAATAGATCCTATAGCTCGATGGC
TGACGCAGCAGGAGGATCTCCCTCGGTCACAAAGAAACCACGCATGCAAC
TAGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGT
CATAATCATAATCATAATCATAATCATAATCACAACTAGCCTAGGAGATC
CTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGC
AACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTACTGAT
CTATCAACAGAGTCCAAGCGAGCTCGATATCAAATTACGCCCCGCCCTGC
CACCTCATCGCAGTACTTGTTGTATTCATTAAGCATTCTGCCGACATGCA
AGCCATCACAAACGCATGATGAACTGAATCGCAGCGGCATCAGACTTGTT
CGCCTTGGCGTATATATTGGCCATGGGAACGGGGCAGAAC
UFO04642.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:48:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14930-RA | 866 | CG14930-RA | 27..770 | 9..752 | 3705 | 99.9 | Plus |
| CG14929-RA | 1515 | CG14929-RA | 527..1126 | 750..151 | 2985 | 99.8 | Minus |
| CG14929-RA | 1515 | CG14929-RA | 1189..1330 | 150..9 | 710 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:48:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 11520454..11521055 | 752..151 | 2995 | 99.8 | Minus |
| 2L | 23513712 | 2L | 11521118..11521259 | 150..9 | 710 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:48:51 has no hits.
UFO04642.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:31:48 Download gff for
UFO04642.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14930-RA | 22..774 | 3..756 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:40:49 Download gff for
UFO04642.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14930-RA | 22..774 | 3..756 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:41:38 Download gff for
UFO04642.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14930-RA | 22..774 | 3..756 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:41:38 Download gff for
UFO04642.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 11520450..11521055 | 151..756 | 99 | <- | Minus |
| 2L | 11521118..11521264 | 3..150 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:40:49 Download gff for
UFO04642.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 11520450..11521055 | 151..756 | 99 | <- | Minus |
| arm_2L | 11521118..11521264 | 3..150 | 97 | | Minus |
