UFO04643.5prime Sequence
1106 bp (1019 high quality bases) assembled on 2009-06-30
> UFO04643.5prime
CAGTCGACATGGCATTCTACGATACTTGGCCGAAAGTAGATCCAATCATA
GTGCTGGTGGTGTTATGTCTGATCGTGTTAGTTGACCGGATATGGGAGAT
GATACTCACCAAGAGGCAGCAATTGGTGTGCCTGAATGCGATTATGGTGC
CGGAGGAGTTGAGAGGAATCATTCCGCCGGAGATTTACCATCGGGCCCGC
ATCTACGAGCTGCATAAAACGGAGCTACAGATATGGAAGTACCTCATCGA
CTTGATTATTACGCTCTGTGAGCTGATATTGGGCTTCTATCCATTCCTCT
GGAGCTTGTCTGCGAAGACTCTACAGAAAATAACCTCCCAAGAGATCTGG
ATAACCTTGATCTTTGTTTTCTACCTGACCATTTACATTTGTATAAGGTT
CCTGCCGGTTCTGATCTATGACAAGTGCCTGCTGGAGTTGCGATATGGGA
TGTCGGGCAAGTTTCCTTGGTACCTCTACTGCTGCATTGGAGCAATGTCC
ATTCTCCTAAGCCAGCTCGTCCTGTTCCCGTTGGCGGCGGCCATTGTGTT
CAGCGTAAAGTTCATTGGGTACTACTTCTTCCTTTGGTTCTGGCTGTTCT
GGGCTACGTTCACCCTGTTGCTGGTATTTTTTTTGCCCTACTGCTGCATT
CCGTGCATTGGACGACAGGTGGTTTTACCAGAGGGCACTGCCCTCTATAT
GGAGGTGAAGCGTGTTTGCGATGTGGTTGGCTTCCCCATGAAGAGGGTAT
TTATCATAAAGACCCGGACAATGCAGTATAGTAATGCCTACTTTTACGGG
AGCTGCTGCCTGAAAAGAATTGTAATTTTTGATACCTTGCTATTGAACAA
GGGCAAGGAACCCAATGAGATCCATCCCTATGAGTGGCAGAGGTCTGACC
AACATCCAGGTGGCGGGCGTGTGTGTCACGAGTTGGGTCACTGGAAGCAC
GACATTTCTACAGGCTACGATCATCATGAAGATTCACTTCTTTTTCACAT
GGACTGTTCGGATTGTTCTTCACTCCTCCCAGCTAAACATGGCAATGGCT
TTCGAGCCTGCGTAAGCCATCTAATGGTTCATCATTGTTCTGAAATGGCT
GAACCT
UFO04643.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:59:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ste24c-RC | 2251 | CG9002-RC | 25..1126 | 9..1096 | 4975 | 97.5 | Plus |
| ste24c-RD | 1716 | CG9002-RD | 25..1126 | 9..1096 | 4975 | 97.5 | Plus |
| ste24c-RA | 2228 | CG9002-RA | 25..1126 | 9..1096 | 4975 | 97.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:59:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 16997452..16998403 | 1060..117 | 4220 | 97.7 | Minus |
| 2R | 25286936 | 2R | 16998460..16998570 | 119..9 | 555 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:59:44 has no hits.
UFO04643.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:35:06 Download gff for
UFO04643.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9002-RB | 25..1126 | 9..1096 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:58:28 Download gff for
UFO04643.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ste24c-RA | 25..1126 | 9..1096 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:35:14 Download gff for
UFO04643.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ste24c-RA | 25..1126 | 9..1096 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:35:14 Download gff for
UFO04643.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 16997410..16998400 | 120..1096 | 97 | <- | Minus |
| 2R | 16998460..16998570 | 9..119 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:58:28 Download gff for
UFO04643.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12884915..12885905 | 120..1096 | 97 | <- | Minus |
| arm_2R | 12885965..12886075 | 9..119 | 100 | | Minus |
