UFO04644.5prime Sequence
1110 bp (1022 high quality bases) assembled on 2009-06-30
> UFO04644.5prime
CAGTCGACATGCGCATTCAAACGTGCTATTTTTGCTCTAGCAAAATATAC
CCGGGCCACGGGGTGCAATTCGTGCGAAATGACTGCAAGGTCTTCAAGTT
CTGCCGAGGCAAGTGTCACAAGGCCTTTAAGCGCAAGAAGAATCCCCGCA
AGGTAGGATGGACGAAGGCGTACCGCAAGGCCGCCGGCAAGGAGCTGGCC
ATCGATCCCAGTTTCGAGTTCGAGAAGCGCCGCAACGTGCCCATGAAATA
CAGCCGCGAGACCTGGCAGAAGGGTCTGGAGGCCATCAAGCGGGTGACGG
AGATTAAGGAGAAACGCACCAGCCACTTTGTCATGGAGCGACTGCGCAAG
GGTCGCCAGGTCGAGATTCAGATGGACGTCAAGGATGTGCAGCGCAACAT
GTCCCTGATTCGCTCCCCAGCCGCAGGGCTGAAGCAACGACGTGCCCAGG
AGGCGGCAGAGGAGGCCGCCCTCATGGAGGAGGATCTGCCCGAGGAGAAG
ATCACCTACGTGGATGCACGCGAACTCGAGAAGAAACTGGAGGAGGGAAT
GGGGGTCGAGGATCTCGAGATGTTAGAAGCCGCAAGCTTTCTAGACCATT
CGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCAT
AATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGG
ATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAAT
CCAGATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGC
GAGCTCGATATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTT
GTAATTCATTAAGCATTCTGCCGACATGGAAGCCATCACAAACGGCATGA
TGAACCTGAATCGCCAGCGGCATCAGCACCTTGTCGCCTTGCGTATATAT
TTGCCCATGGGTGAAACCGGGGGCGAAGAAGTGTCCATATTGGCCACGTT
AATCAAACTGGGTGAACTCACCCAGGATGGCTGAGAACGAAAACATATCT
CATAAACCTTTAGAATAGCAGTTCACCGTACACGCCACACTTGCAATTGG
TTGACTGCGA
UFO04644.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:49:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RpL24-like-RA | 773 | CG6764-RA | 94..666 | 9..581 | 2865 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:49:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 11430847..11431340 | 581..88 | 2470 | 100 | Minus |
| 3R | 32079331 | 3R | 11431407..11431489 | 91..9 | 415 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:49:30 has no hits.
UFO04644.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:31:49 Download gff for
UFO04644.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6764-RA | 187..763 | 9..586 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:15:08 Download gff for
UFO04644.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpL24-like-RA | 94..670 | 9..586 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:40:07 Download gff for
UFO04644.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpL24-like-RA | 94..670 | 9..586 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:40:07 Download gff for
UFO04644.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 11430843..11431338 | 90..586 | 99 | <- | Minus |
| 3R | 11431409..11431489 | 9..89 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:15:08 Download gff for
UFO04644.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 7256565..7257060 | 90..586 | 99 | <- | Minus |
| arm_3R | 7257131..7257211 | 9..89 | 100 | | Minus |
