UFO04645.5prime Sequence
1094 bp (989 high quality bases) assembled on 2009-06-30
> UFO04645.5prime
CAGTCGACATGGGCAAAAGATCGCAGAAGAGCAGTGTGCTAATGGTGTGT
GTGGGCAACCTATGCCGCTCCCCAATTGCCGAGGCTGTGATGCGTGACTT
GGTCGCAAGGGCGGGACTACAGGGGGAGTGGCATGTGGAGAGCGCCGGGA
TCGAGGATTGGCATTCCGGCCACCAACCAGATGAGCGTGCACTGAATGTC
CTGGCCAGGCACAACATCGAATACAATGGCAAGGCGAGAGTTCTAGCTCC
GGAGGACTTCCTCGAATTCGACTACATCTTCGCCATGGATCTGAGCAACC
TGGCCGCCCTGAGGCGCATGGCTCCCAAAGGCACCACTGCCAAGTTGCTG
ATTCTCGGGAATTTTGGCCTGAAACCAGATGAACGCATCATTGAGGATCC
CTATTATGACATTGGTGAAGCATCATTTGAAGAAATTTACCGGCAGTGCA
GCATAGCGTGTAGGAATTTTCTGAAACAAGCGCGCTTAAAACAGATAATG
GCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCA
TAATCATAATCATAATCATAATCATAATCACAACTAGCCTAGGAGATCCT
GGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAA
CCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTACTGGATC
TATCAACAGGAGTCCAAGCGAGCTCGATATCAAATTACGCCCCGCCCTGC
CACTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCCGACATGGAA
AGCCATCACAAACGGCATGATGAACCTGAATCGCCAGCGGCATCAGCACC
TTGTCGCCTTGCGTATAATATTTGCCCATGGTGAAACGGGGGCGAAGAAG
TTGTCCATATGCCACGTTTAAATCAAACTGTGAAACTCACCCAGGGATGC
TGAGACGAAAAACATATTTCTCAATAAACCTTTAGGAAATAGCAGCTTTC
ACCGTACCCGCCACATCTGCAATATATGTTGTAGAACTGCGAAATCGTCT
TGTATTCACTCCGAGCGATGAACCGTCAGTTGCTCATGGAACTG
UFO04645.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:35:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| primo-1-RA | 1336 | CG33748-RA | 146..637 | 9..500 | 2460 | 100 | Plus |
| primo-2-RC | 1336 | CG33747-RC | 146..637 | 9..500 | 2460 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:35:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 13711218..13711572 | 408..54 | 1775 | 100 | Minus |
| 3R | 32079331 | 3R | 13710935..13711027 | 500..408 | 465 | 100 | Minus |
| 3R | 32079331 | 3R | 13711644..13711690 | 55..9 | 235 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 20:35:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| HeT-A | 6083 | HeT-A DM06920 6083bp Derived from U06920.2 (Rel. 67, Last updated, Version 14). | 3833..3922 | 505..418 | 112 | 60 | Minus |
UFO04645.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:31:50 Download gff for
UFO04645.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| primo-2-RC | 146..637 | 9..500 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:49:29 Download gff for
UFO04645.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| primo-1-RA | 146..637 | 9..500 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:11:24 Download gff for
UFO04645.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| primo-2-RC | 146..637 | 9..500 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:11:24 Download gff for
UFO04645.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 13710935..13711027 | 408..500 | 100 | <- | Minus |
| 3R | 13711219..13711571 | 55..407 | 100 | <- | Minus |
| 3R | 13711645..13711690 | 9..54 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:49:29 Download gff for
UFO04645.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 9536657..9536749 | 408..500 | 100 | <- | Minus |
| arm_3R | 9536941..9537293 | 55..407 | 100 | <- | Minus |
| arm_3R | 9537367..9537412 | 9..54 | 100 | | Minus |
