UFO04646.5prime Sequence
1122 bp (1003 high quality bases) assembled on 2009-06-30
> UFO04646.5prime
CAGTCGACATGCCAATAATCAAGAAGTTCTGCTATTGTTTTAGTCTAAGA
ATTGGCGCATTTTCAATTGCGTACGCAGGTCTTACAATGGATGTATTAGA
TACAGTAGCGACTATATATACTAAGTCGCAATATTGCGCTGATATACTAC
TCCTCTGGATAATTTCCACCATTTGGAATATCATTTCCGCATTGGTTCTT
TTGACTGCACTTTTTCGGGAAAATCCGCATTTGCTGCCAGTTCATCTGGT
GACTTCTCTTTGTGGCCTGATGCTCGAAATGACCAATCACATGGTGATTG
CCTCCCTTGGCAGAACCGATTACGTTTTGATATCCTATGCGTTCATTATG
ATTGCCTTTGTATCTGCGGACGTCGTGATCGTGCTGAGCTACTACCAATC
GGAGGTTGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAA
GTGGTCATAATCATAATCATAATCATAATCATAATCACAACTAGCCTAGG
AGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCG
GCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTA
CTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAATTACGCCCC
GCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCCGA
CATGGAAGCCATCACAAACGGCATGATGAACCTGAATCGCCAGCGGCATC
AGCACCTTGTCGCCTTGCGTATAATATTTGCCCATGGTGAAACGGGGGCG
AAGAAGTTGTCCATATTGGCCACGTTTAATCAAAACTGGTGAAACTCACC
CAGGGATTGGCTGAGACGAAAACATATTCTCATAACCCTTTAGGGAAATA
GGCCAGGTTTTCACCGTACACGCCACATCTTGCGAATATATGTGTAGAAC
TGCCGGAAATCGTCGGGTATTCCCTCCAGAGCGATGAAACGTTCAGGTTG
CTCATGGAAACGGTGTTACAGGGTGAACACTATTCCATATTCACCCAGCC
TCCACGTCTTTCATGCATACGGAATCGGAGTGACATCATCAGCGGCCAGA
TGTGGATAGGGCCGATACTTGG
UFO04646.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:58:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ms(2)35Ci-RC | 1489 | CG31733-RC | 213..611 | 9..407 | 1995 | 100 | Plus |
| ms(2)35Ci-RA | 1127 | CG31733-RA | 213..611 | 9..407 | 1995 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:58:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 15292737..15292947 | 9..219 | 1055 | 100 | Plus |
| 2L | 23513712 | 2L | 15293003..15293147 | 213..357 | 710 | 99.3 | Plus |
| 2L | 23513712 | 2L | 15293209..15293258 | 358..407 | 250 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:58:42 has no hits.
UFO04646.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:33:25 Download gff for
UFO04646.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ms(2)35Ci-RA | 128..534 | 1..407 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:57:43 Download gff for
UFO04646.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ms(2)35Ci-RA | 205..611 | 1..407 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:34:37 Download gff for
UFO04646.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ms(2)35Ci-RA | 205..611 | 1..407 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:34:37 Download gff for
UFO04646.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 15292729..15292946 | 1..218 | 98 | -> | Plus |
| 2L | 15293009..15293147 | 219..357 | 100 | -> | Plus |
| 2L | 15293209..15293258 | 358..407 | 100 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:57:43 Download gff for
UFO04646.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 15292729..15292946 | 1..218 | 98 | -> | Plus |
| arm_2L | 15293009..15293147 | 219..357 | 100 | -> | Plus |
| arm_2L | 15293209..15293258 | 358..407 | 100 | == | Plus |
