UFO04648.5prime Sequence
1103 bp (984 high quality bases) assembled on 2009-06-30
> UFO04648.5prime
CAGTCGACATGGTGGGATCTCGAGTGTATGTGGGCGGTCTGCCCTACGGA
GTGCGCGAGCGCGATTTGGAGCGCTTTTTCAAAGGCTACGGCCGCACACG
CGACATCCTCATCAAAAATGGCTACGGCTTTGTGGAATTCGAAGACTATC
GTGATGCCGACGATGCCGTCTATGAACTGAATGGCAAAGAGCTGCTTGGC
GAACGTGTGGTTGTTGAACCCGCCAGGGGTACCGCTCGTGGCAGCAACCG
CGACCGCTACGACGATCGATATGGTGGTCGGCGGGGGGGCGGGGGCGGTC
GTTACAACGAAAAATCATCCTCTCGTTATGGCCCACCGTTGCGCACTGAG
TACCGACTGATTGTGGAGAATTTGTCTAGCCGCGTTAGCTGGCAGGATCT
CAAGGATTACATGCGCCAGGCTGGCGAGGTCACCTATGCCGATGCCCACA
AGCAGCGTCGCAATGAGGGCGTGGTTGAGTTCGCCTCGTTGTCGGACATG
AAGACGGCCATTGAGAAGTTGGATGACACCGAGCTAAACGGCAGGCGGAT
CCACTTGGTCGAGGATCGTCGCGGAGGACGCAGCGGTGGTGGCGGCGGCA
GCGGACGTGGACGCTCCCGTTCGTCCAGCTCCCGATCGCGCTCCCGATCC
CGCAGGCGTTCTCGCTCTCGCCGCTCGTCGCACTCGCGCTCCAAGTCTCG
CAGCCGCTCCAAATCTCGTGGCGGACGCTCCAAGTCCAAGTCGCCAGTCA
AGTCTCGTTCTCGCTCCCGCTCGCGATCCAACAAATCGCGTGACGTGTCC
AAGTCCAAGTCAAAGTCCCACTCCCGCACCCGCTCCCGTTCGCCCAAACG
TGAGCGTGACTCCCGTTCCCGATCGCGGTCCGTCTCGAAGCGCGAGTCCC
GTTCCCGCTCACGTTCCAAGTCCATCCACCGCGACTCCCGTTCACGCGAT
CGATCCGCATCGGCTGAAAAACAAGTCGCGTTCGCGCCTCACGCTTCCGT
TCGGCCTCGCCCAAAATGAACGCCTTCACCGGACGCAATAACGGAAGGCA
TGACGATGCAAGCTTTCTAGAACATTCGTTGGCGCGGCCAGTTATGTCCT
ATC
UFO04648.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:36:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| B52-RN | 1725 | CG10851-RN | 314..1350 | 8..1043 | 5020 | 99.2 | Plus |
| B52-RC | 1557 | CG10851-RC | 146..1182 | 8..1043 | 5020 | 99.2 | Plus |
| B52-RA | 1565 | CG10851-RA | 154..1190 | 8..1043 | 5020 | 99.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:36:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 13665589..13665901 | 469..781 | 1565 | 100 | Plus |
| 3R | 32079331 | 3R | 13666084..13666248 | 782..946 | 825 | 100 | Plus |
| 3R | 32079331 | 3R | 13661733..13661860 | 8..135 | 640 | 100 | Plus |
| 3R | 32079331 | 3R | 13662296..13662404 | 205..313 | 545 | 100 | Plus |
| 3R | 32079331 | 3R | 13662970..13663052 | 314..396 | 415 | 100 | Plus |
| 3R | 32079331 | 3R | 13665449..13665526 | 392..469 | 390 | 100 | Plus |
| 3R | 32079331 | 3R | 13662160..13662231 | 134..205 | 360 | 100 | Plus |
| 3R | 32079331 | 3R | 13666418..13666486 | 946..1016 | 240 | 95.8 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:36:35 has no hits.
UFO04648.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:35:05 Download gff for
UFO04648.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| B52-RA | 158..1201 | 1..1043 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:38:30 Download gff for
UFO04648.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| B52-RA | 147..1190 | 1..1043 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:14:47 Download gff for
UFO04648.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| B52-RA | 147..1190 | 1..1043 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:14:47 Download gff for
UFO04648.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 13665453..13665526 | 396..469 | 100 | -> | Plus |
| 3R | 13665590..13665901 | 470..781 | 100 | -> | Plus |
| 3R | 13666084..13666248 | 782..946 | 100 | -> | Plus |
| 3R | 13666419..13666516 | 947..1043 | 92 | | Plus |
| 3R | 13661726..13661859 | 1..134 | 97 | -> | Plus |
| 3R | 13662161..13662231 | 135..205 | 100 | -> | Plus |
| 3R | 13662297..13662404 | 206..313 | 100 | -> | Plus |
| 3R | 13662970..13663051 | 314..395 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:38:30 Download gff for
UFO04648.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 9487448..9487581 | 1..134 | 97 | -> | Plus |
| arm_3R | 9487883..9487953 | 135..205 | 100 | -> | Plus |
| arm_3R | 9488019..9488126 | 206..313 | 100 | -> | Plus |
| arm_3R | 9488692..9488773 | 314..395 | 100 | -> | Plus |
| arm_3R | 9491175..9491248 | 396..469 | 100 | -> | Plus |
| arm_3R | 9491312..9491623 | 470..781 | 100 | -> | Plus |
| arm_3R | 9491806..9491970 | 782..946 | 100 | -> | Plus |
| arm_3R | 9492141..9492238 | 947..1043 | 92 | | Plus |
