UFO04655.5prime Sequence
1115 bp (1014 high quality bases) assembled on 2009-06-30
> UFO04655.5prime
CAGTCGACATGTTCCGGAATCAGTATGACAACGACACAACCACTTGGAGT
CCGCAGGGTCGTCTCTTCCAGGTGGAGTACGCAATGGAGGCGGTGAAACA
GGGAGCAGCCACCGTGGGACTCAAAGGCACCGACTATGCCGTGCTGGCCG
CCCTGTGCCGCACCTCAAAGGACACGAACACGCTCCAGCGGAAGATCATG
CCGGTGGATGACCACGTGGGTATGTCTATCGCAGGACTAACGGCAGATGC
CCGCGTGGTGTGCCAGTACATGAGGACGGAGTGCATGGCATATCGGCACT
CCTATAACGCAGAATTTCCGGTTCGCCGTTTGGTTTCCAATCTGGGTAAC
AAGCTGCAGACCACCACCCAGCGCTATGATCGTCGTCCCTACGGTGTGGG
CTTGCTGGTGGCTGGATACGATGAGCAGGGACCACATATCTACCAGGTGA
TGCCCACGGCCAATGTGCTCAACTGCAAGGCAATGGCCATTGGATCTCGT
TCGCAGAGTGCTCGCACATATCTGGAGCGAAATATGGAGAGTTTCGAGGA
CTGCGACATGGATGAACTGATATGTCATGCCATTCAGGCCATTCGAGGAT
CGTTGGGTTCCGATGATGTCGAGAATCTCACCATAAATGTGGCCATTGTG
GGCAAGGATGTGCCGTTTAAAATGTTTACGGAAGCCGAGAACCAGAAGTA
TGTGAAATTGGTCAAGGCTATGGATCCACCTCTGGAGGCGGACCACGATC
CTCTATCCGAGGAGGGAATGAGCGATGATGACATGACGGACCACGGACCG
AGTAGCAGTGGAGTTCCACCCAATGATACATCTGACATGGAAACCACTGC
ATCCACCGGCGGCAGTGACGCACATGCAAGCTTTCTAGACCATTCGTTTG
GCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCAT
AATCACACTAGCCTAGAAGATCCTGGTCATGACTAGTGCTGATCTCCACC
AATAAAAAACGCCCGGCGCACGACGTTCTGAACAAATTCAGAATGAGTTC
TGAAGTCATACTGATCTATCACAGGATCAGCGAGCTCGGAATCCAATACG
CCCGCCTGCACTCAT
UFO04655.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:52:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Prosalpha6T-RA | 1020 | CG5648-RA | 69..936 | 8..875 | 4325 | 99.9 | Plus |
| Prosalpha6-RA | 1027 | CG4904-RA | 129..611 | 45..527 | 395 | 73 | Plus |
| Prosalpha6-RB | 1070 | CG4904-RB | 129..611 | 45..527 | 395 | 73 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:52:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 13232107..13232974 | 8..875 | 4325 | 99.9 | Plus |
| 2L | 23513712 | 2L | 10221547..10222029 | 45..527 | 330 | 71.2 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:52:03 has no hits.
UFO04655.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:31:51 Download gff for
UFO04655.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Prosalpha6T-RA | 69..942 | 8..882 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:42:50 Download gff for
UFO04655.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Prosalpha6T-RA | 69..942 | 8..882 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:43:17 Download gff for
UFO04655.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Prosalpha6T-RA | 69..942 | 8..882 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:43:17 Download gff for
UFO04655.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 13232107..13232980 | 8..882 | 99 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:42:50 Download gff for
UFO04655.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 13232107..13232980 | 8..882 | 99 | == | Plus |
